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Chiara Pallara
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Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1642016
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
1112013
Blind prediction of interfacial water positions in CAPRI
MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ...
Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014
612014
Structural basis for the recruitment and activation of the Legionella phospholipase VipD by the host GTPase Rab5
M Lucas, AH Gaspar, C Pallara, AL Rojas, J Fernández-Recio, ...
Proceedings of the National Academy of Sciences 111 (34), E3514-E3523, 2014
552014
Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD
Y Chen, I Tascón, MR Neunuebel, C Pallara, J Brady, LN Kinch, ...
PLoS pathogens 9 (5), e1003382, 2013
382013
Intrinsically active MEK variants are differentially regulated by proteinases and phosphatases
M Ordan, C Pallara, G Maik-Rachline, T Hanoch, FL Gervasio, F Glaser, ...
Scientific reports 8 (1), 11830, 2018
312018
Tetramerization-defects of p53 result in aberrant ubiquitylation and transcriptional activity
V Lang, C Pallara, A Zabala, S Lobato-Gil, F Lopitz-Otsoa, R Farrás, ...
Molecular oncology 8 (5), 1026-1042, 2014
292014
Expanding the frontiers of protein–protein modeling: from docking and scoring to binding affinity predictions and other challenges
C Pallara, B Jiménez‐García, L Pérez‐Cano, M Romero‐Durana, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2192-2200, 2013
262013
Structural prediction of protein–protein interactions by docking: Application to biomedical problems
D Barradas-Bautista, M Rosell, C Pallara, J Fernández-Recio
Advances in protein chemistry and structural biology 110, 203-249, 2018
212018
pyDock scoring for the new modeling challenges in docking: Protein–peptide, homo‐multimers, and domain–domain interactions
C Pallara, B Jiménez‐García, M Romero, IH Moal, J Fernández‐Recio
Proteins: Structure, Function, and Bioinformatics 85 (3), 487-496, 2017
212017
Conformational heterogeneity of unbound proteins enhances recognition in protein–protein encounters
C Pallara, M Rueda, R Abagyan, J Fernández-Recio
Journal of Chemical Theory and Computation 12 (7), 3236-3249, 2016
162016
Interaction of photosystem I from Phaeodactylum tricornutum with plastocyanins as compared with its native cytochrome c6: reunion with a lost donor
P Bernal-Bayard, C Pallara, MC Castell, FP Molina-Heredia, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1847 (12), 1549-1559, 2015
142015
Molecular basis for the protective effects of low-density lipoprotein receptor-related protein 1 (LRP1)-derived peptides against LDL aggregation
A Benitez-Amaro, C Pallara, L Nasarre, A Rivas-Urbina, S Benitez, A Vea, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1861 (7), 1302-1316, 2019
122019
Modeling binding affinity of pathological mutations for computational protein design
M Romero-Durana, C Pallara, F Glaser, J Fernández-Recio
Computational Protein Design, 139-159, 2017
52017
Characterization of p38α autophosphorylation inhibitors that target the non-canonical activation pathway
L González, L Díaz, J Pous, B Baginski, A Duran-Corbera, M Scarpa, ...
Nature Communications 14 (1), 3318, 2023
42023
Development of Innovative Antiatherosclerotic Peptides through the Combination of Molecular Modeling and a Dual (Biochemical‐Cellular) Screening System
A Benitez‐Amaro, C Pallara, L Nasarre, R Ferreira, D de Gonzalo‐Calvo, ...
Advanced Therapeutics 3 (8), 2000037, 2020
32020
Peptidomimetics designed to bind to RAS effector domain are promising cancer therapeutic compounds
C Pallara, D Cabot, J Rivas, S Brun, J Seco, B Abuasaker, T Tarragó, ...
Scientific Reports 12 (1), 15810, 2022
22022
Characterization of p38α autophosphorylation inhibitors that target the non-canonical activation pathway
L Díaz, J Pous, B Baginski, A Duran-Corbera, M Scarpa, I Brun-Heath, ...
Nature Publishing Group, 2023
2023
Vascular cholesterol inhibitors and use thereof
MTT Clua, RP Cosano, C Pallara, VL CORTÉS
US Patent App. 17/609,118, 2022
2022
Characterization of cholesteryl ester-loaded human coronary vascular smooth muscle cell secretome. A source of potential biomarkers of coronary artery disease
JEG Rodríguez, AB Amaro, L Claudi, J Ni, C Pallara, R Prades, T Tarrago, ...
Atherosclerosis 331, e67-e68, 2021
2021
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