| Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system PD Schloss, ML Jenior, CC Koumpouras, SL Westcott, SK Highlander PeerJ 4, e1869, 2016 | 252* | 2016 |
| Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes ML Jenior, JL Leslie, VB Young, PD Schloss MSystems 2 (4), 10.1128/msystems. 00063-17, 2017 | 134* | 2017 |
| Clostridium difficile Alters the Structure and Metabolism of Distinct Cecal Microbiomes during Initial Infection To Promote Sustained Colonization ML Jenior, JL Leslie, VB Young, PD Schloss Msphere 3 (3), 10.1128/msphere. 00261-18, 2018 | 79 | 2018 |
| Enterococci enhance Clostridioides difficile pathogenesis AB Smith, ML Jenior, O Keenan, JL Hart, J Specker, A Abbas, PC Rangel, ... Nature 611 (7937), 780-786, 2022 | 66 | 2022 |
| Intra-and interindividual variations mask interspecies variation in the microbiota of sympatric Peromyscus populations NT Baxter, JJ Wan, AM Schubert, ML Jenior, P Myers, PD Schloss Applied and Environmental Microbiology 81 (1), 396-404, 2015 | 64 | 2015 |
| Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments ML Jenior, TJ Moutinho Jr, BV Dougherty, JA Papin PLoS computational biology 16 (4), e1007099, 2020 | 49 | 2020 |
| The gut microbiota is associated with clearance of Clostridium difficile infection independent of adaptive immunity. JL Leslie, KC Vendrov, ML Jenior, VB Young | 39 | 2019 |
| Protection from lethal Clostridioides difficile infection via intraspecies competition for cogerminant JL Leslie, ML Jenior, KC Vendrov, AK Standke, MR Barron, TJ O’Brien, ... Mbio 12 (2), 10.1128/mbio. 00522-21, 2021 | 24* | 2021 |
| Novel drivers of virulence in Clostridioides difficile identified via context-specific metabolic network analysis ML Jenior, JL Leslie, DA Powers, EM Garrett, KA Walker, ME Dickenson, ... Msystems 6 (5), 10.1128/msystems. 00919-21, 2021 | 16* | 2021 |
| Ten simple rules to increase computational skills among biologists with Code Clubs AK Hagan, NA Lesniak, MJ Balunas, L Bishop, WL Close, MD Doherty, ... PLOS Computational Biology 16 (8), e1008119, 2020 | 8 | 2020 |
| 16S rRNA sequencing with the Illumina MiSeq: library generation, QC, & sequencing J Kozich, P Schloss, N Baxter, M Jenior, C Koumpouras https://github.com/SchlossLab/MiSeq_WetLab_SOP/blob/master/MiSeq_WetLab_SOP.md, 2013 | 7 | 2013 |
| Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling ML Jenior, EM Glass, JA Papin Bioinformatics 39 (6), btad367, 2023 | 5 | 2023 |
| Genome-scale metabolic modeling reveals increased reliance on valine catabolism in clinical isolates of Klebsiella pneumoniae ML Jenior, ME Dickenson, JA Papin Npj Systems Biology and Applications 8 (1), 41, 2022 | 5 | 2022 |
| Lewis Blood Group Antigens are Associated with Altered Susceptibility to Shigellosis JL Leslie, E Weddle, LK Yum, Y Lin, ML Jenior, B Lee, JZ Ma, ... Clinical Infectious Diseases 1409, 2020 | 5* | 2020 |
| Multidimensional Clinical Surveillance of Pseudomonas aeruginosa Reveals Complex Relationships between Isolate Source, Morphology, and Antimicrobial Resistance LJ Dunphy, GL Kolling, ML Jenior, J Carroll, AE Attai, F Farnoud, ... Msphere 6 (4), 10.1128/msphere. 00393-21, 2021 | 4 | 2021 |
| Network analysis of toxin production in Clostridioides difficile identifies key metabolic dependencies DA Powers, ML Jenior, GL Kolling, JA Papin PLOS Computational Biology 19 (4), e1011076, 2023 | 3 | 2023 |
| Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions TJ Moutinho Jr, BC Neubert, ML Jenior, JA Papin PLoS Computational Biology 18 (2), e1009341, 2022 | 2 | 2022 |
| Computational approaches to understanding Clostridioides difficile metabolism and virulence ML Jenior, JA Papin Current opinion in microbiology 65, 108-115, 2022 | 1 | 2022 |
| Clostridioides difficile: Sometimes It Pays To Be Difficult ML Jenior, JA Papin Cell Host & Microbe 28 (3), 358-359, 2020 | 1 | 2020 |
| Functional Anabolic Network Analysis of Human-associated Lactobacillus Strains TJ Moutinho Jr, BC Neubert, ML Jenior, MA Carey, GL Medlock, ... bioRxiv, 746420, 2019 | 1 | 2019 |
Patrick D. SchlossFrederick G Novy Collegiate Professor of Microbiology & Immunology, University of MichiganPatvirtintas el. paštas umich.edu
