| Identification of acquired antimicrobial resistance genes E Zankari, H Hasman, S Cosentino, M Vestergaard, S Rasmussen, ... Journal of antimicrobial chemotherapy 67 (11), 2640-2644, 2012 | 4355 | 2012 |
| In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing A Carattoli, E Zankari, A García-Fernández, M Voldby Larsen, O Lund, ... Antimicrobial agents and chemotherapy 58 (7), 3895-3903, 2014 | 2925 | 2014 |
| Multilocus sequence typing of total-genome-sequenced bacteria MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ... Journal of clinical microbiology 50 (4), 1355-1361, 2012 | 1853 | 2012 |
| Improved method for predicting linear B-cell epitopes JEP Larsen, O Lund, M Nielsen Immunome research 2 (1), 1-7, 2006 | 1417 | 2006 |
| ResFinder 4.0 for predictions of phenotypes from genotypes V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ... Journal of Antimicrobial Chemotherapy 75 (12), 3491-3500, 2020 | 1216 | 2020 |
| Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations M Nielsen, C Lundegaard, P Worning, SL Lauemøller, K Lamberth, ... Protein Science 12 (5), 1007-1017, 2003 | 1212 | 2003 |
| Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli KG Joensen, F Scheutz, O Lund, H Hasman, RS Kaas, EM Nielsen, ... Journal of clinical microbiology 52 (5), 1501-1510, 2014 | 1107 | 2014 |
| Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014 | 949 | 2014 |
| NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 811 C Lundegaard, K Lamberth, M Harndahl, S Buus, O Lund, M Nielsen Nucleic acids research 36 (suppl_2), W509-W512, 2008 | 848 | 2008 |
| An Aboriginal Australian genome reveals separate human dispersals into Asia M Rasmussen, X Guo, Y Wang, KE Lohmueller, S Rasmussen, ... Science 334 (6052), 94-98, 2011 | 820 | 2011 |
| Insights from 20 years of bacterial genome sequencing M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ... Functional & integrative genomics 15, 141-161, 2015 | 762 | 2015 |
| Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction MV Larsen, C Lundegaard, K Lamberth, S Buus, O Lund, M Nielsen BMC bioinformatics 8, 1-12, 2007 | 756 | 2007 |
| NetMHCpan, a method for MHC class I binding prediction beyond humans I Hoof, B Peters, J Sidney, LE Pedersen, A Sette, O Lund, S Buus, ... Immunogenetics 61, 1-13, 2009 | 749 | 2009 |
| Prediction of residues in discontinuous B‐cell epitopes using protein 3D structures P Haste Andersen, M Nielsen, OLE Lund Protein Science 15 (11), 2558-2567, 2006 | 656 | 2006 |
| Solving the problem of comparing whole bacterial genomes across different sequencing platforms RS Kaas, P Leekitcharoenphon, FM Aarestrup, O Lund PloS one 9 (8), e104984, 2014 | 625 | 2014 |
| Peptide binding predictions for HLA DR, DP and DQ molecules P Wang, J Sidney, Y Kim, A Sette, O Lund, M Nielsen, B Peters BMC bioinformatics 11, 1-12, 2010 | 623 | 2010 |
| NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and-B locus protein of known sequence M Nielsen, C Lundegaard, T Blicher, K Lamberth, M Harndahl, S Justesen, ... PloS one 2 (8), e796, 2007 | 615 | 2007 |
| NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility JE Hansen, O Lund, N Tolstrup, AA Gooley, KL Williams, S Brunak Glycoconjugate journal 15, 115-130, 1998 | 602 | 1998 |
| Reliable B cell epitope predictions: impacts of method development and improved benchmarking JV Kringelum, C Lundegaard, O Lund, M Nielsen PLoS computational biology 8 (12), e1002829, 2012 | 592 | 2012 |
| Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method M Nielsen, C Lundegaard, O Lund BMC bioinformatics 8 (1), 1-12, 2007 | 587 | 2007 |
Morten NielsenDepartment of Health Technology, The Technical University ofPatvirtintas el. paštas cbs.dtu.dk
