hiroyuki kuwahara
hiroyuki kuwahara
Research Scientist at KAUST
Patvirtintas el. paštas
iBioSim: a tool for the analysis and design of genetic circuits
CJ Myers, N Barker, K Jones, H Kuwahara, C Madsen, NPD Nguyen
Bioinformatics 25 (21), 2848-2849, 2009
An efficient and exact stochastic simulation method to analyze rare events in biochemical systems
H Kuwahara, I Mura
The Journal of chemical physics 129 (16), 2008
Promoter analysis and prediction in the human genome using sequence-based deep learning models
R Umarov, H Kuwahara, Y Li, X Gao, V Solovyev
Bioinformatics 35 (16), 2730-2737, 2019
Sequence2vec: a novel embedding approach for modeling transcription factor binding affinity landscape
H Dai, R Umarov, H Kuwahara, Y Li, L Song, X Gao
Bioinformatics 33 (22), 3575-3583, 2017
Analysis of transcript-deleterious variants in Mendelian disorders: implications for RNA-based diagnostics
S Maddirevula, H Kuwahara, N Ewida, HE Shamseldin, N Patel, ...
Genome biology 21, 1-21, 2020
Automated abstraction methodology for genetic regulatory networks
H Kuwahara, CJ Myers, MS Samoilov, NA Barker, AP Arkin
Transactions on computational systems biology VI, 150-175, 2006
MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind
H Kuwahara, M Alazmi, X Cui, X Gao
Nucleic acids research 44 (W1), W217-W225, 2016
Bistability in feedback circuits as a byproduct of evolution of evolvability
H Kuwahara, OS Soyer
Molecular systems biology 8 (1), 564, 2012
Accurate prediction of hot spot residues through physicochemical characteristics of amino acid sequences
P Chen, J Li, L Wong, H Kuwahara, JZ Huang, X Gao
Proteins: Structure, Function, and Bioinformatics 81 (8), 1351-1362, 2013
Learning genetic regulatory network connectivity from time series data
N Barker, C Myers, H Kuwahara
International Conference on Industrial, Engineering and Other Applications …, 2006
A standard-enabled workflow for synthetic biology
CJ Myers, J Beal, TE Gorochowski, H Kuwahara, C Madsen, ...
Biochemical Society Transactions 45 (3), 793-803, 2017
PGCN: Disease gene prioritization by disease and gene embedding through graph convolutional neural networks
Y Li, H Kuwahara, P Yang, L Song, X Gao
biorxiv, 532226, 2019
Learning genetic regulatory network connectivity from time series data
NA Barker, CJ Myers, H Kuwahara
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (1), 152-165, 2009
The design of a genetic muller c-element
NPD Nguyen, H Kuwahara, CJ Myers, JP Keener
13th IEEE International Symposium on Asynchronous Circuits and Systems …, 2007
Temperature Control of Fimbriation Circuit Switch in Uropathogenic Escherichia coli: Quantitative Analysis via Automated Model Abstraction
H Kuwahara, CJ Myers, MS Samoilov
PLoS Computational Biology 6 (3), e1000723, 2010
Stochastic steady state gain in a gene expression process with mRNA degradation control
H Kuwahara, R Schwartz
Journal of the Royal Society Interface 9 (72), 1589-1598, 2012
Analysis of the effects of related fingerprints on molecular similarity using an eigenvalue entropy approach
H Kuwahara, X Gao
Journal of Cheminformatics 13, 1-12, 2021
Recessive, deleterious variants in SMG8 expand the role of nonsense-mediated decay in developmental disorders in humans
F Alzahrani, H Kuwahara, Y Long, M Al-Owain, M Tohary, M AlSayed, ...
The American Journal of Human Genetics 107 (6), 1178-1185, 2020
Design and analysis of a robust genetic Muller C-element
N Nguyen, C Myers, H Kuwahara, C Winstead, J Keener
Journal of theoretical biology 264 (2), 174-187, 2010
Model Abstraction and Temporal Behavior Analysis of Genetic Regulatory Networks.
H Kuwahara
University of Utah, USA, 2008
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Straipsniai 1–20