Hannah K Wayment-Steele
Hannah K Wayment-Steele
Jane Coffin Childs Postdoctoral Fellow, Brandeis University
Verified email at - Homepage
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RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look
R Rangan, IN Zheludev, RJ Hagey, EA Pham, HK Wayment-Steele, ...
Rna 26 (8), 937-959, 2020
Surface and stability characterization of a nanoporous ZIF-8 thin film
F Tian, AM Cerro, AM Mosier, HK Wayment-Steele, RS Shine, A Park, ...
The Journal of Physical Chemistry C 118 (26), 14449-14456, 2014
Variational encoding of complex dynamics
CX HernŠndez, HK Wayment-Steele, MM Sultan, BE Husic, VS Pande
Physical Review E 97 (6), 062412, 2018
Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics
K Leppek, GW Byeon, W Kladwang, HK Wayment-Steele, CH Kerr, AF Xu, ...
Nature communications 13 (1), 1536, 2022
Transferable neural networks for enhanced sampling of protein dynamics
MM Sultan, HK Wayment-Steele, VS Pande
Journal of chemical theory and computation 14 (4), 1887-1894, 2018
Theoretical basis for stabilizing messenger RNA through secondary structure design
HK Wayment-Steele, DS Kim, CA Choe, JJ Nicol, R Wellington-Oguri, ...
Nucleic acids research 49 (18), 10604-10617, 2021
Predicting multiple conformations via sequence clustering and AlphaFold2
HK Wayment-Steele, A Ojoawo, R Otten, JM Apitz, W Pitsawong, ...
Nature 625 (7996), 832-839, 2024
RNA secondary structure packages evaluated and improved by high-throughput experiments
HK Wayment-Steele, W Kladwang, AI Strom, J Lee, A Treuille, A Becka, ...
Nature methods 19 (10), 1234-1242, 2022
Prediction of multiple conformational states by combining sequence clustering with AlphaFold2
HK Wayment-Steele, S Ovchinnikov, L Colwell, D Kern
BioRxiv, 2022.10. 17.512570, 2022
A modular DNA scaffold to study protein–protein interactions at single-molecule resolution
D Kostrz, HK Wayment-Steele, JL Wang, M Follenfant, VS Pande, ...
Nature nanotechnology 14 (10), 988-993, 2019
Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular switches
JOL Andreasson, MR Gotrik, MJ Wu, HK Wayment-Steele, W Kladwang, ...
Proceedings of the National Academy of Sciences 119 (18), e2112979119, 2022
A minimum variance clustering approach produces robust and interpretable coarse-grained models
BE Husic, KA McKiernan, HK Wayment-Steele, MM Sultan, VS Pande
Journal of chemical theory and computation 14 (2), 1071-1082, 2018
Monitoring N3 Dye Adsorption and Desorption on TiO2 Surfaces: A Combined QCM-D and XPS Study
HK Wayment-Steele, LE Johnson, F Tian, MC Dixon, L Benz, MS Johal
ACS applied materials & interfaces 6 (12), 9093-9099, 2014
Deep learning models for predicting RNA degradation via dual crowdsourcing
HK Wayment-Steele, W Kladwang, AM Watkins, DS Kim, B Tunguz, ...
Nature Machine Intelligence 4 (12), 1174-1184, 2022
Investigating the role of boundary bricks in DNA brick self-assembly
HK Wayment-Steele, D Frenkel, A Reinhardt
Soft Matter 13 (8), 1670-1680, 2017
Redesigning the EteRNA100 for the Vienna 2 folding engine
RV Koodli, B Rudolfs, HK Wayment-Steele, Eterna Structure Designers, ...
BioRxiv, 2021.08. 26.457839, 2021
Evaluating riboswitch optimality
H Wayment-Steele, M Wu, M Gotrik, R Das
Methods in enzymology 623, 417-450, 2019
Note: Variational encoding of protein dynamics benefits from maximizing latent autocorrelation
HK Wayment-Steele, VS Pande
The Journal of chemical physics 149 (21), 2018
Monitoring of single and double lipid membrane formation with high spatiotemporal resolution using evanescent light scattering microscopy
B Agnarsson, HK Wayment-Steele, F HŲŲk, A Kunze
Nanoscale 8 (46), 19219-19223, 2016
Eterna Participants and R
HK Wayment-Steele, W Kladwang, AM Watkins, DS Kim, B Tunguz, ...
Das, Nat. Mach. Intell 4, 1174-1184, 2022
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