Michael Kuhn
Michael Kuhn
research staff scientist & research coordinator in the lab of Peer Bork, EMBL
Verified email at - Homepage
Cited by
Cited by
STRING v10: protein–protein interaction networks, integrated over the tree of life
D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ...
Nucleic acids research 43 (D1), D447-D452, 2015
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research 45 (D1), D362-D368, 2017
STRING v9. 1: protein-protein interaction networks, with increased coverage and integration
A Franceschini, D Szklarczyk, S Frankild, M Kuhn, M Simonovic, A Roth, ...
Nucleic acids research 41 (D1), D808-D815, 2012
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
D Szklarczyk, A Franceschini, M Kuhn, M Simonovic, A Roth, P Minguez, ...
Nucleic acids research 39 (suppl 1), D561-D568, 2011
STRING 8—a global view on proteins and their functional interactions in 630 organisms
LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ...
Nucleic acids research 37 (suppl_1), D412-D416, 2009
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ...
Nucleic acids research 44 (D1), D286-D293, 2016
Extensive impact of non-antibiotic drugs on human gut bacteria
L Maier, M Pruteanu, M Kuhn, G Zeller, A Telzerow, EE Anderson, ...
Nature 555 (7698), 623-628, 2018
Drug target identification using side-effect similarity
M Campillos, M Kuhn, AC Gavin, LJ Jensen, P Bork
Science 321 (5886), 263-266, 2008
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data
D Szklarczyk, A Santos, C von Mering, LJ Jensen, P Bork, M Kuhn
Nucleic acids research 44 (D1), D380-D384, 2016
The SIDER database of drugs and side effects
M Kuhn, I Letunic, LJ Jensen, P Bork
Nucleic acids research 44 (D1), D1075-D1079, 2016
A side effect resource to capture phenotypic effects of drugs
M Kuhn, M Campillos, I Letunic, LJ Jensen, P Bork
Molecular systems biology 6 (1), 343, 2010
STITCH: interaction networks of chemicals and proteins
M Kuhn, C von Mering, M Campillos, LJ Jensen, P Bork
Nucleic acids research 36 (suppl_1), D684-D688, 2007
STRING 7—recent developments in the integration and prediction of protein interactions
C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ...
Nucleic acids research 35 (suppl_1), D358-D362, 2007
SuperTarget and Matador: resources for exploring drug-target relationships
S Günther, M Kuhn, M Dunkel, M Campillos, C Senger, E Petsalaki, ...
Nucleic acids research 36 (suppl_1), D919-D922, 2007
eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ...
Nucleic Acids Research 40 (D1), D284-D289, 2012
eggNOG v4. 0: nested orthology inference across 3686 organisms
S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ...
Nucleic acids research 42 (D1), D231-D239, 2014
eggNOG: automated construction and annotation of orthologous groups of genes
LJ Jensen, P Julien, M Kuhn, C von Mering, J Muller, T Doerks, P Bork
Nucleic acids research 36 (suppl_1), D250-D254, 2007
STITCH 4: integration of protein–chemical interactions with user data
M Kuhn, D Szklarczyk, S Pletscher-Frankild, TH Blicher, C von Mering, ...
Nucleic acids research 42 (D1), D401-D407, 2014
STITCH 3: zooming in on protein–chemical interactions
M Kuhn, D Szklarczyk, A Franceschini, C von Mering, LJ Jensen, P Bork
Nucleic Acids Research, 2011
Generation and evaluation of dimension-reduced amino acid parameter representations by artificial neural networks
J Meiler, M Müller, A Zeidler, F Schmäschke
Journal of Molecular Modeling 7 (9), 360-369, 2001
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