Shraddha Pai

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Citations	1352	676
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Viviane LabrieAssistant Professor of Psychiatry, University of TorontoVerified email at camh.net
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Tarang KhareEnrich BioscienceVerified email at enrichbioscience.com
Karolis KoncevičiusInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, LithuaniaVerified email at gmc.vu.lt
Shirley HuiUniversity of TorontoVerified email at utoronto.ca
Julia GustavsenAgroscopeVerified email at agroscope.admin.ch
Mrinal PalCAMH, Toronto, ONVerified email at camh.ca
Zita LiutkeviciuteMedical University of ViennaVerified email at meduniwien.ac.at
Benjamin J. BlencoweProfessor, University of TorontoVerified email at utoronto.ca
Philipp Kapranov, PhDXiamen UniversityVerified email at xmu.edu.cn
Manuel IrimiaCentre for Genomic RegulationVerified email at crg.eu
Rafal Kustrauniversity of TorontoVerified email at utoronto.ca
Lincoln SteinDirector of Informatics and Biocomputing, Ontario Institute for Cancer Research Verified email at oicr.on.ca
Alexander R PicoGladstone InstitutesVerified email at gladstone.ucsf.edu
Nansheng ChenSimon Fraser UniversityVerified email at sfu.ca
Piroska E SzaboAssociate Professor, Van Andel Research InstituteVerified email at vai.org
Bryan KillingerRush University Medical CenterVerified email at rush.edu
Peipei LiVan Andel Research InstituteVerified email at vai.org
Jan BaumbachUniversity of HamburgVerified email at uni-hamburg.de

Shraddha Pai

Principal Investigator, Ontario Institute for Cancer Research

Verified email at utoronto.ca

precision medicine mental health cognition bioinformatics machine learning


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5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary T Khare, S Pai, K Koncevicius, M Pal, E Kriukiene, Z Liutkeviciute, M Irimia, ... Nature structural & molecular biology 19 (10), 1037-1043, 2012	281	2012
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics N Chen, TW Harris, I Antoshechkin, C Bastiani, T Bieri, D Blasiar, ... Nucleic acids research 33 (suppl_1), D383-D389, 2005	243	2005
RCy3: Network biology using Cytoscape from within R JA Gustavsen, S Pai, R Isserlin, B Demchak, AR Pico F1000Research 8 (1774), 1774, 2019	156	2019
Epigenetics of major psychosis: progress, problems and perspectives V Labrie, S Pai, A Petronis Trends in genetics 28 (9), 427-435, 2012	146	2012
Patient similarity networks for precision medicine S Pai, GD Bader Journal of molecular biology 430 (18), 2924-2938, 2018	130	2018
Identification of a nematode chemosensory gene family N Chen, S Pai, Z Zhao, A Mah, R Newbury, RC Johnsen, Z Altun, ... Proceedings of the National Academy of Sciences 102 (1), 146-151, 2005	81	2005
netDx: interpretable patient classification using integrated patient similarity networks S Pai, S Hui, R Isserlin, MA Shah, H Kaka, GD Bader Molecular systems biology 15 (3), e8497, 2019	80	2019
DNA unmethylome profiling by covalent capture of CpG sites E Kriukienė, V Labrie, T Khare, G Urbanavičiūtė, A Lapinaitė, ... Nature communications 4 (1), 2190, 2013	78	2013
Differential methylation of enhancer at IGF2 is associated with abnormal dopamine synthesis in major psychosis S Pai, P Li, B Killinger, L Marshall, P Jia, J Liao, A Petronis, PE Szabó, ... Nature communications 10 (1), 2046, 2019	62	2019
Gviz: Plotting data and annotation information along genomic coordinates F Hahne, S Durinck, R Ivanek, A Mueller, S Lianoglou, G Tan, L Parsons, ... R package version 1 (4), 2013	35	2013
Minimal impairment in a rat model of duration discrimination following excitotoxic lesions of primary auditory and prefrontal cortices S Pai, JC Erlich, C Kopec, CD Brody Frontiers in systems neuroscience 5, 74, 2011	22	2011
Semi-automated atlas-based analysis of brain histological sections CD Kopec, AC Bowers, S Pai, CD Brody Journal of neuroscience methods 196 (1), 12-19, 2011	18	2011
RCy3: Network biology using Cytoscape from within R. F1000Res 8, 1774 JA Gustavsen, S Pai, R Isserlin, B Demchak, AR Pico	10	2019
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks S Pai, P Weber, R Isserlin, H Kaka, S Hui, MA Shah, L Giudice, R Giugno, ... F1000Research 9, 1239, 2021	4	2021
COVID-19 cluster size and transmission rates in schools from crowdsourced case reports P Tupper, S Pai, C Colijn Elife 11, e76174, 2022	3	2022
Plotting data and annotation information along genomic coordinates F Hahne, S Durinck, R Ivanek, A Mueller, S Lianoglou, G Tan, L Parsons, ...	2	2016
Network Approaches for Precision Oncology S Pai Computational Methods for Precision Oncology, 199-213, 2022	1	2022
Metformin reduces the clonal fitness of Dnmt3aR878H hematopoietic stem and progenitor cells by reversing their aberrant metabolic and epigenetic state S Chan, M Hosseini, V Voisin, A Chegini, A Varesi, S Cathelin, ...		2024
Fourteen quick tips for crowdsourcing geographically linked data for public health advocacy J Atienza, A Benedict, LD Stein, K Pirzada, C White, S Pai PLoS Computational Biology 19 (9), e1011285, 2023		2023
Multi-scale systems genomics analysis predicts pathways, cell types, and drug targets involved in normative variation in peri-adolescent human cognition S Pai, S Hui, P Weber, S Narayan, O Whitley, P Li, V Labrie, J Baumbach, ... Cerebral Cortex 33 (13), 8581-8593, 2023		2023

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