Stebėti
Cezary Czaplewski
Cezary Czaplewski
Faculty of Chemistry, University of Gdańsk
Patvirtintas el. paštas ug.edu.pl - Pagrindinis puslapis
Pavadinimas
Cituota
Cituota
Metai
Coarse-graining of condensed phase and biomolecular systems
GA Voth
CRC press, 2008
7622008
Cumulant-based expressions for the multibody terms for the correlation between local and electrostatic interactions in the united-residue force field
A Liwo, C Czaplewski, J Pillardy, HA Scheraga
The Journal of Chemical Physics 115 (5), 2323-2347, 2001
2762001
Modification and optimization of the united-residue (UNRES) potential energy function for canonical simulations. I. Temperature dependence of the effective energy function and …
A Liwo, M Khalili, C Czaplewski, S Kalinowski, S Ołdziej, K Wachucik, ...
The Journal of Physical Chemistry B 111 (1), 260-285, 2007
2182007
United‐residue force field for off‐lattice protein‐structure simulations: III. Origin of backbone hydrogen‐bonding cooperativity in united‐residue potentials
A Liwo, R Kaźmierkiewicz, C Czaplewski, M Groth, S Ołdziej, RJ Wawak, ...
Journal of computational chemistry 19 (3), 259-276, 1998
2041998
Computational techniques for efficient conformational sampling of proteins
A Liwo, C Czaplewski, S Ołdziej, HA Scheraga
Current opinion in structural biology 18 (2), 134-139, 2008
1982008
Recent improvements in prediction of protein structure by global optimization of a potential energy function
J Pillardy, C Czaplewski, A Liwo, J Lee, DR Ripoll, R Kaźmierkiewicz, ...
Proceedings of the National Academy of Sciences 98 (5), 2329-2333, 2001
1952001
Physics-based protein-structure prediction using a hierarchical protocol based on the UNRES force field: Assessment in two blind tests
S Ołdziej, C Czaplewski, A Liwo, M Chinchio, M Nanias, JA Vila, M Khalili, ...
Proceedings of the National Academy of Sciences 102 (21), 7547-7552, 2005
1772005
A method for optimizing potential-energy functions by a hierarchical design of the potential-energy landscape: application to the UNRES force field
A Liwo, P Arłukowicz, C Czaplewski, S Ołdziej, J Pillardy, HA Scheraga
Proceedings of the National Academy of Sciences 99 (4), 1937-1942, 2002
1482002
A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions
A Liwo, M Baranowski, C Czaplewski, E Gołaś, Y He, D Jagieła, P Krupa, ...
Journal of molecular modeling 20, 1-15, 2014
1432014
Parametrization of backbone− electrostatic and multibody contributions to the UNRES force field for protein-structure prediction from ab initio energy surfaces of model systems
A Liwo, S Ołdziej, C Czaplewski, U Kozłowska, HA Scheraga
The Journal of Physical Chemistry B 108 (27), 9421-9438, 2004
1222004
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1172019
Investigation of protein folding by coarse-grained molecular dynamics with the UNRES force field
GG Maisuradze, P Senet, C Czaplewski, A Liwo, HA Scheraga
The Journal of Physical Chemistry A 114 (13), 4471-4485, 2010
1162010
Application of multiplexed replica exchange molecular dynamics to the UNRES force field: tests with α and α+ β proteins
C Czaplewski, S Kalinowski, A Liwo, HA Scheraga
Journal of chemical theory and computation 5 (3), 627-640, 2009
1092009
Molecular simulation study of cooperativity in hydrophobic association
C Czaplewski, S Rodziewicz-Motowidło, A Liwo, DR Ripoll, RJ Wawak, ...
Protein Science 9 (6), 1235-1245, 2000
1022000
Potential of mean force of association of large hydrophobic particles: Toward the nanoscale limit
M Makowski, C Czaplewski, A Liwo, HA Scheraga
The Journal of Physical Chemistry B 114 (2), 993-1003, 2010
882010
Molecular dynamics study of a gelsolin‐derived peptide binding to a lipid bilayer containing phosphatidylinositol 4, 5‐bisphosphate
I Liepiņa, C Czaplewski, P Janmey, A Liwo
Peptide Science 71 (1), 49-70, 2003
862003
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
842021
Replica exchange and multicanonical algorithms with the coarse-grained united-residue (UNRES) force field
M Nanias, C Czaplewski, HA Scheraga
Journal of chemical theory and computation 2 (3), 513-528, 2006
802006
Optimization of the UNRES force field by hierarchical design of the potential-energy landscape. 3. Use of many proteins in optimization
S Ołdziej, J Ła̧giewka, A Liwo, C Czaplewski, M Chinchio, M Nanias, ...
The Journal of Physical Chemistry B 108 (43), 16950-16959, 2004
802004
Optimization of the UNRES force field by hierarchical design of the potential-energy landscape. 2. Off-lattice tests of the method with single proteins
S Ołdziej, A Liwo, C Czaplewski, J Pillardy, HA Scheraga
The Journal of Physical Chemistry B 108 (43), 16934-16949, 2004
762004
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