Fast protein tertiary structure retrieval based on global surface shape similarity L Sael, B Li, D La, Y Fang, K Ramani, R Rustamov, D Kihara Proteins: Structure, Function, and Bioinformatics 72 (4), 1259-1273, 2008 | 155 | 2008 |
Characterization of local geometry of protein surfaces with the visibility criterion B Li, S Turuvekere, M Agrawal, D La, K Ramani, D Kihara Proteins: Structure, Function, and Bioinformatics 71 (2), 670-683, 2008 | 109 | 2008 |
Rapid comparison of properties on protein surface L Sael, D La, B Li, R Rustamov, D Kihara Proteins: Structure, function, and bioinformatics 73 (1), 1-10, 2008 | 100 | 2008 |
3D-SURFER: software for high-throughput protein surface comparison and analysis D La, J Esquivel-Rodríguez, V Venkatraman, B Li, L Sael, S Ueng, ... Bioinformatics 25 (21), 2843-2844, 2009 | 92 | 2009 |
Predicting protein functional sites with phylogenetic motifs D La, B Sutch, DR Livesay Proteins: Structure, Function, and Bioinformatics 58 (2), 309-320, 2005 | 86 | 2005 |
Predicting permanent and transient protein–protein interfaces D La, M Kong, W Hoffman, YI Choi, D Kihara Proteins: Structure, Function, and Bioinformatics 81 (5), 805-818, 2013 | 65 | 2013 |
Next generation sequencing of the hepatitis C virus NS5B gene reveals potential novel S282 drug resistance mutations H Ji, RA Kozak, MJ Biondi, R Pilon, D Vallee, BB Liang, D La, J Kim, ... Virology 477, 1-9, 2015 | 48 | 2015 |
N-Terminal Gly224–Gly411 Domain in Listeria Adhesion Protein Interacts with Host Receptor Hsp60 B Jagadeesan, AE Fleishman Littlejohn, MAR Amalaradjou, AK Singh, ... PloS one 6 (6), e20694, 2011 | 44 | 2011 |
The evolutionary origins and catalytic importance of conserved electrostatic networks within TIM‐barrel proteins DR Livesay, D La Protein science 14 (5), 1158-1170, 2005 | 44 | 2005 |
A novel method for protein–protein interaction site prediction using phylogenetic substitution models D La, D Kihara Proteins: Structure, Function, and Bioinformatics 80 (1), 126-141, 2012 | 32 | 2012 |
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets D La, DR Livesay BMC bioinformatics 6, 1-12, 2005 | 29 | 2005 |
Using motif-based methods in multiple genome analyses: a case study comparing orthologous mesophilic and thermophilic proteins D La, M Silver, RC Edgar, DR Livesay Biochemistry 42 (30), 8988-8998, 2003 | 28 | 2003 |
MINER: software for phylogenetic motif identification D La, DR Livesay Nucleic acids research 33 (suppl_2), W267-W270, 2005 | 25 | 2005 |
Improved phylogenetic motif detection using parsimony U Roshan, DR Livesay, D La Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05), 19-26, 2005 | 8 | 2005 |
BindML/BindML+: Detecting protein-protein interaction interface propensity from amino acid substitution patterns Q Wei, D La, D Kihara Computational Protein Design, 279-289, 2017 | 7 | 2017 |
Predicting protein functional sites with phylogenetic motifs: past, present and beyond DR Livesay, DB Kc, D La Protein Function Prediction for Omics Era, 93-105, 2011 | 1 | 2011 |
KIR3DL1 Alleles and Their Epistatic Interactions with HLA Class I in Resistance and Susceptibility to HIV Infection in the Pumwani Sex Worker Cohort M Luo, C Czarnecki, M Nebroski, D La, J Kimani, F Plummer AIDS RESEARCH AND HUMAN RETROVIRUSES 32, 206-206, 2016 | | 2016 |
A Preliminary Analysis of HIV-1 Escape Mutations in Subtype A1 Virus and Impact on Disease Progression Rates E Shadabi, B Liang, J Carlson, R Sampathkumar, J Ho, D La, R Capina, ... AIDS RESEARCH AND HUMAN RETROVIRUSES 32, 274-274, 2016 | | 2016 |
Next generation sequencing of the hepatitis C virus NS5B gene reveals potential novel S282 drug resistance mutations. JHZ Ji HeZhao, RA Kozak, MJ Biondi, R Pilon, D Vallee, BB Liang, D La, ... | | 2015 |
ORAL PRESENTATION Open Access R Sampathkumar, E Shadabi, D La, J Ho, B Liang, J Kimani, FA Plummer, ... | | 2014 |