NicolÚ Fusi
NicolÚ Fusi
Partner Researcher, Microsoft Research
Verified email at - Homepage
Cited by
Cited by
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
JG Doench, N Fusi, M Sullender, M Hegde, EW Vaimberg, KF Donovan, ...
Nature biotechnology 34 (2), 184-191, 2016
Gaussian Processes for Big Data
J Hensman, N Fusi, ND Lawrence
Uncertainty in Artificial Intelligence, 2013
Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs
J Listgarten, M Weinstein, BP Kleinstiver, AA Sousa, JK Joung, J Crawford, ...
Nature biomedical engineering 2 (1), 38-47, 2018
Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens
FJ Najm, C Strand, KF Donovan, M Hegde, KR Sanson, EW Vaimberg, ...
Nature biotechnology 36 (2), 179-189, 2018
Geometric dataset distances via optimal transport
D Alvarez-Melis, N Fusi
Advances in Neural Information Processing Systems 33, 21428-21439, 2020
Unravelling the enigma of selective vulnerability in neurodegeneration: motor neurons resistant to degeneration in ALS show distinct gene expression characteristics and†…
A Brockington, K Ning, PR Heath, E Wood, J Kirby, N Fusi, N Lawrence, ...
Acta neuropathologica 125, 95-109, 2013
Probabilistic matrix factorization for automated machine learning
N Fusi, R Sheth, M Elibol
Advances in neural information processing systems 31, 2018
Joint modelling of confounding factors and prominent genetic regulators provides increased accuracy in genetical genomics studies
N Fusi, O Stegle, ND Lawrence
PLoS computational biology 8 (1), e1002330, 2012
A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control
I Bartha, JM Carlson, CJ Brumme, PJ McLaren, ZL Brumme, M John, ...
elife 2, e01123, 2013
Gaussian process prior variational autoencoders
FP Casale, A Dalca, L Saglietti, J Listgarten, N Fusi
Advances in neural information processing systems 31, 2018
Can generalist foundation models outcompete special-purpose tuning? case study in medicine
H Nori, YT Lee, S Zhang, D Carignan, R Edgar, N Fusi, N King, J Larson, ...
arXiv preprint arXiv:2311.16452, 2023
Impact of pre-adapted HIV transmission
JM Carlson, VY Du, N Pfeifer, A Bansal, VYF Tan, K Power, CJ Brumme, ...
Nature medicine 22 (6), 606-613, 2016
Transcriptomic indices of fast and slow disease progression in two mouse models of amyotrophic lateral sclerosis
G Nardo, R Iennaco, N Fusi, PR Heath, M Marino, MC Trolese, ...
Brain 136 (11), 3305-3332, 2013
Probabilistic neural architecture search
FP Casale, J Gordon, N Fusi
arXiv preprint arXiv:1902.05116, 2019
Further Improvements to Linear Mixed Models for Genome-Wide Association Studies
C Widmer, C Lippert, O Weissbrod, N Fusi, C Kadie, R Davidson, ...
Scientific Reports 4, 2014
Convolutions are competitive with transformers for protein sequence pretraining
KK Yang, N Fusi, AX Lu
Cell Systems 15 (3), 286-294. e2, 2024
Warped linear mixed models for the genetic analysis of transformed phenotypes
N Fusi, C Lippert, ND Lawrence, O Stegle
Nature communications 5 (1), 4890, 2014
In Silico Predictive Modeling of CRISPR/Cas9 guide efficiency
N Fusi, I Smith, J Doench, J Listgarten
BioRxiv, 021568, 2015
Initialization and regularization of factorized neural layers
M Khodak, N Tenenholtz, L Mackey, N Fusi
arXiv preprint arXiv:2105.01029, 2021
Protein generation with evolutionary diffusion: sequence is all you need
S Alamdari, N Thakkar, R van den Berg, AX Lu, N Fusi, AP Amini, ...
bioRxiv, 2023.09. 11.556673, 2023
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