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Jonathan Doye
Jonathan Doye
Department of Chemistry, University of Oxford
Verified email at chem.ox.ac.uk - Homepage
Title
Cited by
Cited by
Year
Global optimization by basin-hopping and the lowest energy structures of Lennard-Jones clusters containing up to 110 atoms
DJ Wales, JPK Doye
The Journal of Physical Chemistry A 101 (28), 5111-5116, 1997
36081997
On the biophysics and kinetics of toehold-mediated DNA strand displacement
N Srinivas, TE Ouldridge, P Šulc, JM Schaeffer, B Yurke, AA Louis, ...
Nucleic acids research 41 (22), 10641-10658, 2013
5282013
Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model
TE Ouldridge, AA Louis, JPK Doye
The Journal of chemical physics 134 (8), 2011
5042011
Global minima for transition metal clusters described by Sutton–Chen potentials
JPK Doye, DJ Wales
New journal of chemistry 22 (7), 733-744, 1998
5011998
The effect of the range of the potential on the structures of clusters
JPK Doye, DJ Wales, RS Berry
The Journal of chemical physics 103 (10), 4234-4249, 1995
4821995
The double-funnel energy landscape of the 38-atom Lennard-Jones cluster
JPK Doye, MA Miller, DJ Wales
The Journal of Chemical Physics 110 (14), 6896-6906, 1999
3481999
Energy landscapes: from clusters to biomolecules
DJ Wales, JPK Doye, MA Miller, PN Mortenson, TR Walsh
Advances in Chemical Physics 115, 1-111, 2000
3422000
Sequence-dependent thermodynamics of a coarse-grained DNA model
P Šulc, F Romano, TE Ouldridge, L Rovigatti, JPK Doye, AA Louis
The Journal of chemical physics 137 (13), 2012
3382012
Introducing improved structural properties and salt dependence into a coarse-grained model of DNA
BEK Snodin, F Randisi, M Mosayebi, P Šulc, JS Schreck, F Romano, ...
The Journal of chemical physics 142 (23), 2015
3292015
The Cambridge cluster database
DJ Wales, JPK Doye, A Dullweber, MP Hodges, FY Naumkin, F Calvo, ...
3252001
Structural consequences of the range of the interatomic potential a menagerie of clusters
JPK Doye, DJ Wales
Journal of the Chemical Society, Faraday Transactions 93 (24), 4233-4243, 1997
3171997
Evolution of the potential energy surface with size for Lennard-Jones clusters
JPK Doye, MA Miller, DJ Wales
The Journal of Chemical Physics 111 (18), 8417-8428, 1999
2871999
Thermodynamics of global optimization
JPK Doye, DJ Wales
Physical review letters 80 (7), 1357, 1998
2831998
Network topology of a potential energy landscape: A static scale-free network
JPK Doye
Physical review letters 88 (23), 238701, 2002
2622002
DNA hybridization kinetics: zippering, internal displacement and sequence dependence
TE Ouldridge, P Šulc, F Romano, JPK Doye, AA Louis
Nucleic acids research 41 (19), 8886-8895, 2013
2582013
Thermodynamics and the global optimization of Lennard-Jones clusters
JPK Doye, DJ Wales, MA Miller
The Journal of Chemical Physics 109 (19), 8143-8153, 1998
2361998
Reversible self-assembly of patchy particles into monodisperse icosahedral clusters
AW Wilber, JPK Doye, AA Louis, EG Noya, MA Miller, P Wong
The Journal of chemical physics 127 (8), 2007
2322007
Saddle points and dynamics of Lennard-Jones clusters, solids, and supercooled liquids
JPK Doye, DJ Wales
The Journal of Chemical Physics 116 (9), 3777-3788, 2002
2302002
Tetrahedral global minimum for the 98-atom Lennard-Jones cluster
RH Leary, JPK Doye
Physical Review E 60 (6), R6320, 1999
2261999
Coarse-graining DNA for simulations of DNA nanotechnology
JPK Doye, TE Ouldridge, AA Louis, F Romano, P Šulc, C Matek, ...
Physical Chemistry Chemical Physics 15 (47), 20395-20414, 2013
2232013
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