Alexander R Pico

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Citations	22674	11929
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Chris EveloHead Department of Bioinformatics - BiGCaT, Maastricht University ORCID:0000-0002-5301-3142Verified email at maastrichtuniversity.nl
Bruce ConklinInvestigator Gladstone and Professor at UCSFVerified email at gladstone.ucsf.edu
Martina KutmonAssistant professor, Maastricht University, The NetherlandsVerified email at maastrichtuniversity.nl
Thomas KelderCTO, EdgeLeap, The NetherlandsVerified email at edgeleap.com
John H MorrisUCSFVerified email at cgl.ucsf.edu
Anders RiuttaInstitute for Data Science and Biotechnology, Gladstone InstitutesVerified email at andersriutta.com
Egon WillighagenTGX, NUTRIM, Maastricht University/NL, ORCID:0000-0001-7542-0286, https://social.edu.nl/@egonwVerified email at maastrichtuniversity.nl
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Andra WaagmeesterMicelio bvbaVerified email at micelio.be
Trey IdekerUniversity of California San DiegoVerified email at ucsd.edu
Keiichiro OnoUniversity of California, San DiegoVerified email at ucsd.edu
Ryan A. MillerMaastricht UniversityVerified email at maastrichtuniversity.nl
Nathan SalomonisAssociate Professor Cincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Dr. Susan Steinbusch-CoortAssociate Professor, dept of Bionformatics-BiGCaT, NUTRIM, Maastricht University, NLVerified email at maastrichtuniversity.nl
Marvin MartensPostDoctoral Researcher, Maastricht UniversityVerified email at maastrichtuniversity.nl
Venkatesh L. Murthy, MD, PhDAssociate Chief of Cardiology for Translational Research & Innovation, University of MichiganVerified email at umich.edu
Anwesha Bohler (née Dutta)Program Manager, AmazonVerified email at amazon.com
Alexander C ZambonDepartment of Pharmaceutical Sciences Keck Graduate InstituteVerified email at kgi.edu
Elisa CirilloVerified email at maastrichtuniversity.nl
John K. WienckeUniversity of California San FranciscoVerified email at ucsf.edu

Alexander R Pico

Gladstone Institutes

Verified email at gladstone.ucsf.edu - Homepage

Systems Biology Network Biology Bioinformatics Data Visualization Open Source


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Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007	2826	2007
Glioma Groups Based on 1p/19q, IDH, and TERT Promoter Mutations in Tumors JE Eckel-Passow, DH Lachance, AM Molinaro, KM Walsh, PA Decker, ... New England Journal of Medicine 372 (26), 2499-2508, 2015	2164	2015
A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069-1076, 2012	1569	2012
Cytoscape automation: empowering workflow-based network analysis D Otasek, JH Morris, J Bouças, AR Pico, B Demchak Genome biology 20, 1-15, 2019	1310	2019
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ... Nucleic acids research 46 (D1), D661-D667, 2018	974	2018
WikiPathways: pathway editing for the people AR Pico, T Kelder, MP Van Iersel, K Hanspers, BR Conklin, C Evelo PLoS biology 6 (7), e184, 2008	815	2008
WikiPathways: connecting communities M Martens, A Ammar, A Riutta, A Waagmeester, DN Slenter, K Hanspers, ... Nucleic acids research 49 (D1), D613-D621, 2021	731	2021
Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage JA Wamstad, JM Alexander, RM Truty, A Shrikumar, F Li, KE Eilertson, ... Cell 151 (1), 206-220, 2012	674	2012
WikiPathways: building research communities on biological pathways T Kelder, MP Van Iersel, K Hanspers, M Kutmon, BR Conklin, CT Evelo, ... Nucleic acids research 40 (D1), D1301-D1307, 2012	646	2012
Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility M Wrensch, RB Jenkins, JS Chang, RF Yeh, Y Xiao, PA Decker, ... Nature genetics 41 (8), 905-908, 2009	589	2009
Crystal structure of Hck in complex with a Src family–selective tyrosine kinase inhibitor T Schindler, F Sicheri, A Pico, A Gazit, A Levitzki, J Kuriyan Molecular cell 3 (5), 639-648, 1999	562	1999
Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019	539	2019
WikiPathways: capturing the full diversity of pathway knowledge M Kutmon, A Riutta, N Nunes, K Hanspers, EL Willighagen, A Bohler, ... Nucleic acids research 44 (D1), D488-D494, 2016	507	2016
Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021	505	2021
PathVisio 3: an extendable pathway analysis toolbox M Kutmon, MP van Iersel, A Bohler, T Kelder, N Nunes, AR Pico, CT Evelo PLoS computational biology 11 (2), e1004085, 2015	503	2015
Presenting and exploring biological pathways with PathVisio MP van Iersel, T Kelder, AR Pico, K Hanspers, S Coort, BR Conklin, ... BMC bioinformatics 9, 1-9, 2008	439	2008
Structure of the RCK domain from the E. coli K+ channel and demonstration of its presence in the human BK channel Y Jiang, A Pico, M Cadene, BT Chait, R MacKinnon Neuron 29 (3), 593-601, 2001	401	2001
Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020	384	2020
Structure of the human BK channel Ca2+-activation apparatus at 3.0 Å resolution P Yuan, MD Leonetti, AR Pico, Y Hsiung, R MacKinnon Science 329 (5988), 182-186, 2010	358	2010
GenMAPP 2: new features and resources for pathway analysis N Salomonis, K Hanspers, AC Zambon, K Vranizan, SC Lawlor, ... BMC bioinformatics 8, 1-12, 2007	331	2007

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