| IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes IMA Chen, K Chu, K Palaniappan, M Pillay, A Ratner, J Huang, ... Nucleic acids research 47 (D1), D666-D677, 2019 | 685 | 2019 |
| Microbial species delineation using whole genome sequences NJ Varghese, S Mukherjee, N Ivanova, KT Konstantinidis, K Mavrommatis, ... Nucleic acids research 43 (14), 6761-6771, 2015 | 602 | 2015 |
| IMG 4 version of the integrated microbial genomes comparative analysis system VM Markowitz, IMA Chen, K Palaniappan, K Chu, E Szeto, M Pillay, ... Nucleic acids research 42 (D1), D560-D567, 2014 | 569 | 2014 |
| Protein structure determination using metagenome sequence data S Ovchinnikov, H Park, N Varghese, PS Huang, GA Pavlopoulos, DE Kim, ... Science 355 (6322), 294-298, 2017 | 466 | 2017 |
| IMG/M: integrated genome and metagenome comparative data analysis system IMA Chen, VM Markowitz, K Chu, K Palaniappan, E Szeto, M Pillay, ... Nucleic acids research, gkw929, 2016 | 441 | 2016 |
| Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ... Nature biotechnology 36 (4), 359-367, 2018 | 362 | 2018 |
| A genomic catalog of Earths microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 356 | 2021 |
| IMG/M 4 version of the integrated metagenome comparative analysis system VM Markowitz, IMA Chen, K Chu, E Szeto, K Palaniappan, M Pillay, ... Nucleic acids research 42 (D1), D568-D573, 2014 | 288 | 2014 |
| The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ... Nucleic acids research 49 (D1), D751-D763, 2021 | 266 | 2021 |
| 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ... Nature biotechnology 35 (7), 676-683, 2017 | 224 | 2017 |
| Genome‐based evolutionary history of Pseudomonas spp C Hesse, F Schulz, CT Bull, BT Shaffer, Q Yan, N Shapiro, KA Hassan, ... Environmental Microbiology 20 (6), 2142-2159, 2018 | 151 | 2018 |
| Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato CW Beukes, M Palmer, P Manyaka, WY Chan, JR Avontuur, E van Zyl, ... Frontiers in microbiology 8, 1154, 2017 | 85 | 2017 |
| Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria LP Hutt, M Huntemann, A Clum, M Pillay, K Palaniappan, N Varghese, ... Standards in genomic sciences 12 (1), 1-8, 2017 | 41 | 2017 |
| DOE JGI metagenome workflow A Clum, M Huntemann, B Bushnell, B Foster, B Foster, S Roux, PP Hajek, ... Msystems 6 (3), e00804-20, 2021 | 36 | 2021 |
| Complementary metagenomic approaches improve reconstruction of microbial diversity in a forest soil LV Alteio, F Schulz, R Seshadri, N Varghese, W Rodriguez-Reillo, E Ryan, ... Msystems 5 (2), e00768-19, 2020 | 35 | 2020 |
| Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom B Nowinski, CB Smith, CM Thomas, K Esson, R Marin III, CM Preston, ... Scientific data 6 (1), 129, 2019 | 34 | 2019 |
| Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain
KM Scott, J Williams, CMB Porter, S Russel, TL Harmer, JH Paul, ... Environmental microbiology 20 (8), 2686-2708, 2018 | 28 | 2018 |
| Absence of genome reduction in diverse, facultative endohyphal bacteria DA Baltrus, K Dougherty, KR Arendt, M Huntemann, A Clum, M Pillay, ... Microbial genomics 3 (2), 2017 | 28 | 2017 |
| Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus IK Jordan, AB Conley, IV Antonov, RA Arthur, ED Cook, GP Cooper, ... Journal of bacteriology 193 (20), 5879-5880, 2011 | 27 | 2011 |
| GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease DH Haft, N Varghese PloS one 6 (12), e28886, 2011 | 25 | 2011 |
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryPatvirtintas el. paštas lbl.gov
