| The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7, 1-17, 2015 | 374 | 2015 |
| BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies A Lamurias, D Sousa, LA Clarke, FM Couto BMC bioinformatics 20, 1-12, 2019 | 76 | 2019 |
| Extracting microRNA-gene relations from biomedical literature using distant supervision A Lamurias, LA Clarke, FM Couto PloS one 12 (3), e0171929, 2017 | 54 | 2017 |
| A silver standard corpus of human phenotype-gene relations D Sousa, A Lamúrias, FM Couto arXiv preprint arXiv:1903.10728, 2019 | 50 | 2019 |
| Text Mining for Bioinformatics Using Biomedical Literature A Lamurias, FM Couto | 50 | 2019 |
| MER: a shell script and annotation server for minimal named entity recognition and linking FM Couto, A Lamurias Journal of cheminformatics 10, 1-10, 2018 | 46 | 2018 |
| Identifying human phenotype terms by combining machine learning and validation rules M Lobo, A Lamurias, FM Couto BioMed Research International 2017 (1), 8565739, 2017 | 44 | 2017 |
| Semantic Similarity Definition FM Couto, A Lamurias | 41 | 2019 |
| Metagenomic binning with assembly graph embeddings A Lamurias, M Sereika, M Albertsen, K Hose, TD Nielsen Bioinformatics 38 (19), 44814487, 2022 | 33 | 2022 |
| Improving chemical entity recognition through h-index based semantic similarity A Lamurias, JD Ferreira, FM Couto Journal of cheminformatics 7, 1-9, 2015 | 29 | 2015 |
| Chemical compound and drug name recognition using CRFs and semantic similarity based on ChEBI A Lamurias, T Grego, FM Couto BioCreative Challenge Evaluation Workshop 2, 75, 2013 | 25 | 2013 |
| PPR-SSM: personalized PageRank and semantic similarity measures for entity linking A Lamurias, P Ruas, FM Couto BMC bioinformatics 20, 1-12, 2019 | 21 | 2019 |
| An extended overview of the CLEF 2020 ChEMU lab: information extraction of chemical reactions from patents J He, DQ Nguyen, SA Akhondi, C Druckenbrodt, C Thorne, R Hoessel, ... Proceedings of the CLEF 2020 conference, 2020 | 19 | 2020 |
| Lasigebiotm at MEDIQA 2019: biomedical question answering using bidirectional transformers and named entity recognition A Lamurias, FM Couto Proceedings of the 18th BioNLP workshop and shared task, 523-527, 2019 | 19 | 2019 |
| Linking chemical and disease entities to ontologies by integrating PageRank with extracted relations from literature P Ruas, A Lamurias, FM Couto Journal of Cheminformatics 12, 1-11, 2020 | 17 | 2020 |
| MER: a minimal named-entity recognition tagger and annotation server FM Couto, LF Campos, A Lamurias Proceedings of the BioCreative 5, 130-137, 2017 | 17 | 2017 |
| Using neural networks for relation extraction from biomedical literature D Sousa, A Lamurias, FM Couto Artificial Neural Networks, 289-305, 2021 | 15 | 2021 |
| Generating a Tolerogenic Cell Therapy Knowledge Graph from Literature A Lamurias, JD Ferreira, LA Clarke, FM Couto Frontiers in immunology 8, 1656, 2017 | 13 | 2017 |
| Generating biomedical question answering corpora from Q&A forums A Lamurias, D Sousa, FM Couto IEEE Access 8, 161042-161051, 2020 | 12 | 2020 |
| ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt M Barros, A Lamurias, G Figueiro, M Antunes, J Teixeira, A Pinheiro, ... | 12 | 2016 |
Francisco M CoutoLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, PortugalPatvirtintas el. paštas campus.ul.pt
