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Ray Luo
Ray Luo
Molecular Biology and Biochemistry, Biomedical Engineering, and Chemical and Biomolecular
Verified email at uci.edu - Homepage
Title
Cited by
Cited by
Year
The Amber biomolecular simulation programs
DA Case, TE Cheatham III, T Darden, H Gohlke, R Luo, KM Merz Jr, ...
Journal of computational chemistry 26 (16), 1668-1688, 2005
96332005
Amber 10; 2008
DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
University of California, San Francisco, 2008
8891*2008
Amber 2021
DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ...
University of California, San Francisco, 2021
52082021
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
Y Duan, C Wu, S Chowdhury, MC Lee, G Xiong, W Zhang, R Yang, ...
J. Comput. Chem 24, 1999-2012, 0
4946*
AMBER 9; 2006
DA Case, TA Dardern, TE Cheatham, CL Simmerling, J Wang, RE Duke, ...
University of California, San Francisco, 2006
3712*2006
Amber 14
DA Case, V Babin, J Berryman, RM Betz, Q Cai, DS Cerutti, ...
University of California, San Francisco, 2014
646*2014
Accelerated Poisson–Boltzmann calculations for static and dynamic systems
R Luo, L David, MK Gilson
Journal of computational chemistry 23 (13), 1244-1253, 2002
5322002
AMBER 12
J Wang, RE Duke, R Luo, RC Walker, W Zhang, KM Merz, B Roberts, ...
University of California: San Francisco, 2012
476*2012
Recent Developments and Applications of the MMPBSA Method
C Wang, DA Greene, L Xiao, R Qi, R Luo
Frontiers in Molecular Biosciences 4, 87, 2018
4492018
AMBER11. University of California, San Francisco
DA Case, TA Darden, TE Cheatham III, CL Simmerling, J Wang, RE Duke, ...
Google Scholar There is no corresponding record for this reference, 2010
3142010
Implicit nonpolar solvent models
C Tan, YH Tan, R Luo
The Journal of Physical Chemistry B 111 (42), 12263-12274, 2007
2602007
New-generation amber united-atom force field
L Yang, C Tan, MJ Hsieh, J Wang, Y Duan, P Cieplak, J Caldwell, ...
The journal of physical chemistry B 110 (26), 13166-13176, 2006
2492006
Virtual screening using molecular simulations
T Yang, JC Wu, C Yan, Y Wang, R Luo, MB Gonzales, KN Dalby, P Ren
Proteins: Structure, Function, and Bioinformatics 79 (6), 1940-1951, 2011
2122011
AMBER 2018; 2018
DA Case, IY Ben-Shalom, SR Brozell, DS Cerutti, TE Cheatham III, ...
University of California, San Francisco, 2018
209*2018
Calculating protein–ligand binding affinities with MMPBSA: Method and error analysis
C Wang, PH Nguyen, K Pham, D Huynh, TBN Le, H Wang, P Ren, R Luo
Journal of computational chemistry 37 (27), 2436-2446, 2016
2042016
How well does Poisson−Boltzmann implicit solvent agree with explicit solvent? A quantitative analysis
C Tan, L Yang, R Luo
The Journal of Physical Chemistry B 110 (37), 18680-18687, 2006
1932006
A Poisson–Boltzmann dynamics method with nonperiodic boundary condition
Q Lu, R Luo
The Journal of chemical physics 119 (21), 11035-11047, 2003
1862003
Development of polarizable models for molecular mechanical calculations I: parameterization of atomic polarizability
J Wang, P Cieplak, J Li, T Hou, R Luo, Y Duan
The Journal of Physical Chemistry B 115 (12), 3091-3099, 2011
1682011
The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins
D Song, R Luo, HF Chen
Journal of Chemical Information and Modeling 57 (5), 1166-1178, 2017
1652017
An analysis of the interactions between the Sem− 5 SH3 domain and its ligands using molecular dynamics, free energy calculations, and sequence analysis
W Wang, WA Lim, A Jakalian, J Wang, J Wang, R Luo, CI Bayly, ...
Journal of the American Chemical Society 123 (17), 3986-3994, 2001
1602001
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Articles 1–20