| BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons NF Alikhan, NK Petty, NL Ben Zakour, SA Beatson BMC genomics 12, 1-10, 2011 | 3004 | 2011 |
| Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á OToole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021 | 1120 | 2021 |
| Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases 22 (1), 35-42, 2022 | 861 | 2022 |
| The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity Z Zhou, NF Alikhan, K Mohamed, Y Fan, M Achtman, D Brown, ... Genome research 30 (1), 138-152, 2020 | 746* | 2020 |
| GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann, C Vaz, AP Francisco, ... Genome research 28 (9), 1395-1404, 2018 | 703 | 2018 |
| A genomic overview of the population structure of Salmonella NF Alikhan, Z Zhou, MJ Sergeant, M Achtman PLoS genetics 14 (4), e1007261, 2018 | 543 | 2018 |
| Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7 B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ... Cell reports 35 (13), 2021 | 445 | 2021 |
| Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ... The Lancet Public Health 6 (5), e335-e345, 2021 | 366 | 2021 |
| Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak ME Pearce, NF Alikhan, TJ Dallman, Z Zhou, K Grant, MCJ Maiden International journal of food microbiology 274, 1-11, 2018 | 191 | 2018 |
| Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant P Elliott, D Haw, H Wang, O Eales, CE Walters, KEC Ainslie, C Atchison, ... Science 374 (6574), eabl9551, 2021 | 128 | 2021 |
| Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture R Gilroy, A Ravi, M Getino, I Pursley, DL Horton, NF Alikhan, D Baker, ... PeerJ 9, e10941, 2021 | 116 | 2021 |
| CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes DJ Baker, A Aydin, T Le-Viet, GL Kay, S Rudder, L de Oliveira Martins, ... Genome medicine 13, 1-11, 2021 | 107* | 2021 |
| Pan-genome analysis of ancient and modern Salmonella enterica demonstrates genomic stability of the invasive para C lineage for millennia Z Zhou, I Lundstrøm, A Tran-Dien, S Duchêne, NF Alikhan, MJ Sergeant, ... Current Biology 28 (15), 2420-2428. e10, 2018 | 105* | 2018 |
| Emergence of human-adapted Salmonella enterica is linked to the Neolithization process FM Key, C Posth, LR Esquivel-Gomez, R Hübler, MA Spyrou, ... Nature ecology & evolution 4 (3), 324-333, 2020 | 104 | 2020 |
| Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation M Bawn, NF Alikhan, G Thilliez, M Kirkwood, NE Wheeler, L Petrovska, ... PLoS genetics 16 (6), e1008850, 2020 | 73 | 2020 |
| Genomic diversity of Salmonella enterica-The UoWUCC 10K genomes project M Achtman, Z Zhou, NF Alikhan, W Tyne, J Parkhill, M Cormican, ... Wellcome Open Research 5, 2020 | 67 | 2020 |
| The impact of viral mutations on recognition by SARS-CoV-2 specific T cells TI de Silva, G Liu, BB Lindsey, D Dong, SC Moore, NS Hsu, D Shah, ... Iscience 24 (11), 2021 | 66 | 2021 |
| Genome-wide identification and characterization of a superfamily of bacterial extracellular contractile injection systems L Chen, N Song, B Liu, N Zhang, NF Alikhan, Z Zhou, Y Zhou, S Zhou, ... Cell reports 29 (2), 511-521. e2, 2019 | 63 | 2019 |
| REACT-1 round 12 report: resurgence of SARS-CoV-2 infections in England associated with increased frequency of the Delta variant S Riley, H Wang, O Eales, D Haw, CE Walters, KEC Ainslie, C Atchison, ... MedRxiv, 2021.06. 17.21259103, 2021 | 56 | 2021 |
| Mechanisms Involved in Acquisition of blaNDM Genes by IncA/C2 and IncFIIY Plasmids AM Wailan, HE Sidjabat, WK Yam, NF Alikhan, NK Petty, AL Sartor, ... Antimicrobial agents and chemotherapy 60 (7), 4082-4088, 2016 | 55 | 2016 |
Zhemin ZhouMedical School, Soochow University, ChinaPatvirtintas el. paštas suda.edu.cn
