Amber 10 DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ... University of California, 2008 | 12360* | 2008 |
Amber 2021 DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ... University of California, San Francisco, 2021 | 5796 | 2021 |
Routine microsecond molecular dynamics simulations with AMBER on GPUs. 2. Explicit solvent particle mesh Ewald R Salomon-Ferrer, AW Gotz, D Poole, S Le Grand, RC Walker Journal of chemical theory and computation 9 (9), 3878-3888, 2013 | 3227 | 2013 |
An overview of the Amber biomolecular simulation package R Salomon‐Ferrer, DA Case, RC Walker Wiley Interdisciplinary Reviews: Computational Molecular Science 3 (2), 198-210, 2013 | 2595 | 2013 |
Routine microsecond molecular dynamics simulations with AMBER on GPUs. 1. Generalized born AW Gotz, MJ Williamson, D Xu, D Poole, S Le Grand, RC Walker Journal of chemical theory and computation 8 (5), 1542-1555, 2012 | 2033 | 2012 |
Lipid14: the amber lipid force field CJ Dickson, BD Madej, ÅA Skjevik, RM Betz, K Teigen, IR Gould, ... Journal of chemical theory and computation 10 (2), 865-879, 2014 | 1301 | 2014 |
Long-time-step molecular dynamics through hydrogen mass repartitioning CW Hopkins, S Le Grand, RC Walker, AE Roitberg Journal of chemical theory and computation 11 (4), 1864-1874, 2015 | 1106 | 2015 |
SPFP: Speed without compromise—A mixed precision model for GPU accelerated molecular dynamics simulations S Le Grand, AW Götz, RC Walker Computer Physics Communications 184 (2), 374-380, 2013 | 1105 | 2013 |
AMBER 10; University of California: San Francisco, 2008 DA Case, TA Darden, TE Cheatham III, CL Simmerling, J Wang, RE Duke, ... Google Scholar There is no corresponding record for this reference, 2008 | 510 | 2008 |
Routine access to millisecond time scale events with accelerated molecular dynamics LCT Pierce, R Salomon-Ferrer, C Augusto F. de Oliveira, JA McCammon, ... Journal of chemical theory and computation 8 (9), 2997-3002, 2012 | 506 | 2012 |
The implementation of a fast and accurate QM/MM potential method in Amber RC Walker, MF Crowley, DA Case Journal of computational chemistry 29 (7), 1019-1031, 2008 | 472 | 2008 |
Improved reweighting of accelerated molecular dynamics simulations for free energy calculation Y Miao, W Sinko, L Pierce, D Bucher, RC Walker, JA McCammon Journal of chemical theory and computation 10 (7), 2677-2689, 2014 | 410 | 2014 |
GPU-accelerated molecular dynamics and free energy methods in Amber18: performance enhancements and new features TS Lee, DS Cerutti, D Mermelstein, C Lin, S LeGrand, TJ Giese, ... Journal of chemical information and modeling 58 (10), 2043-2050, 2018 | 389 | 2018 |
AMBER 14; University of California: San Francisco, 2014 DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ... There is no corresponding record for this reference, 1-826, 2014 | 315* | 2014 |
Implementation of the SCC-DFTB method for hybrid QM/MM simulations within the Amber molecular dynamics package GM Seabra, RC Walker, M Elstner, DA Case, AE Roitberg The Journal of Physical Chemistry A 111 (26), 5655-5664, 2007 | 277 | 2007 |
AMBER 2018, University of California, San Francisco, 2018 DA Case, JT Berryman, RM Betz, DS Cerutti, TE Cheatham III, TA Darden, ... There is no corresponding record for this reference, 2015 | 274 | 2015 |
GAFFlipid: a General Amber Force Field for the accurate molecular dynamics simulation of phospholipid CJ Dickson, L Rosso, RM Betz, RC Walker, IR Gould Soft Matter 8 (37), 9617-9627, 2012 | 264 | 2012 |
The FF14SB force field DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ... Amber 14, 29-31, 2014 | 254 | 2014 |
LIPID11: a modular framework for lipid simulations using amber ÅA Skjevik, BD Madej, RC Walker, K Teigen The Journal of Physical Chemistry B 116 (36), 11124-11136, 2012 | 232 | 2012 |
Wiley Interdiscip R Salomon-Ferrer, DA Case, RC Walker Rev.: Comput. Mol. Sci 3 (2), 198-210, 2013 | 229 | 2013 |