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| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 633 | 2011 |
| DSK: k-mer counting with very low memory usage G Rizk, D Lavenier, R Chikhi Bioinformatics 29 (5), 652-653, 2013 | 372 | 2013 |
| Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species TC Mathers, Y Chen, G Kaithakottil, F Legeai, ST Mugford, ... Genome biology 18, 1-20, 2017 | 220 | 2017 |
| Evaluation of the streams-C C-to-FPGA compiler: an applications perspective J Frigo, M Gokhale, D Lavenier Proceedings of the 2001 ACM/SIGDA ninth international symposium on Field …, 2001 | 160 | 2001 |
| GASSST: global alignment short sequence search tool G Rizk, D Lavenier Bioinformatics 26 (20), 2534-2540, 2010 | 133 | 2010 |
| Multiple comparative metagenomics using multiset k-mer counting G Benoit, P Peterlongo, M Mariadassou, E Drezen, S Schbath, D Lavenier, ... PeerJ Computer Science 2, e94, 2016 | 115 | 2016 |
| Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum F Legeai, G Rizk, T Walsh, O Edwards, K Gordon, D Lavenier, N Leterme, ... BMC genomics 11, 1-9, 2010 | 109 | 2010 |
| Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph G Benoit, C Lemaitre, D Lavenier, E Drezen, T Dayris, R Uricaru, G Rizk BMC bioinformatics 16, 1-14, 2015 | 107 | 2015 |
| GATB: genome assembly & analysis tool box E Drezen, G Rizk, R Chikhi, C Deltel, C Lemaitre, P Peterlongo, ... Bioinformatics 30 (20), 2959-2961, 2014 | 95 | 2014 |
| SAMBA: hardware accelerator for biological sequence comparison P Guerdoux-Jamet, D Lavenier Bioinformatics 13 (6), 609-615, 1997 | 91 | 1997 |
| PLAST: parallel local alignment search tool for database comparison H Van Nguyen, D Lavenier BMC bioinformatics 10, 1-13, 2009 | 82 | 2009 |
| Compareads: comparing huge metagenomic experiments N Maillet, C Lemaitre, R Chikhi, D Lavenier, P Peterlongo BMC bioinformatics 13, 1-10, 2012 | 76 | 2012 |
| GPU accelerated RNA folding algorithm G Rizk, D Lavenier Computational Science–ICCS 2009: 9th International Conference Baton Rouge …, 2009 | 65 | 2009 |
| Samba: Systolic accelerator for molecular biological applications D Lavenier INRIA/IRISA report, 1996 | 64 | 1996 |
| FPGA implementation of the k-means clustering algorithm for hyperspectral images D Lavenier Los Alamos National Laboratory LAUR 00-3079, 2000 | 62 | 2000 |
| COMMET: comparing and combining multiple metagenomic datasets N Maillet, G Collet, T Vannier, D Lavenier, P Peterlongo 2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014 | 61 | 2014 |
| Using blocks of skewers for faster computation of pixel purity index JP Theiler, DD Lavenier, NR Harvey, SJ Perkins, JJ Szymanski Imaging Spectrometry VI 4132, 61-71, 2000 | 59 | 2000 |
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