Alexander Kanitz
Sustainable data analysis with Snakemake
F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ...
F1000Research 10, 2021
Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system
A Galgano, M Forrer, L Jaskiewicz, A Kanitz, M Zavolan, AP Gerber
PLoS One 3 (9), e3164, 2008
Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data
A Kanitz, F Gypas, AJ Gruber, AR Gruber, G Martin, M Zavolan
Genome biology 16, 1-26, 2015
PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3′ end sequencing
CJ Herrmann, R Schmidt, A Kanitz, P Artimo, AJ Gruber, M Zavolan
Nucleic acids research 48 (D1), D174-D179, 2020
GA4GH: International policies and standards for data sharing across genomic research and healthcare
HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ...
Cell genomics 1 (2), 2021
The expression levels of microRNA-361-5p and its target VEGFA are inversely correlated in human cutaneous squamous cell carcinoma
A Kanitz, J Imig, PJ Dziunycz, A Primorac, A Galgano, GFL Hofbauer, ...
PLoS One 7 (11), e49568, 2012
Structural analysis of the L-alanoyl-D-glutamate endopeptidase domain of Listeria bacteriophage endolysin Ply500 reveals a new member of the LAS peptidase family
IP Korndörfer, A Kanitz, J Danzer, M Zimmer, MJ Loessner, A Skerra
Acta Crystallographica Section D: Biological Crystallography 64 (6), 644-650, 2008
RNA regulons and the RNA-protein interaction network
J Imig, A Kanitz, AP Gerber
Biomolecular concepts 3 (5), 403-414, 2012
Preferential gene transfer of lentiviral vectors to liver-derived cells, using a hepatitis B peptide displayed on GP64
DM Markusic, A Kanitz, RPJ Oude-Elferink, J Seppen
Human gene therapy 18 (7), 673-679, 2007
Circuitry of mRNA regulation
A Kanitz, AP Gerber
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2 (2), 245-251, 2010
Tandem RNA isolation reveals functional rearrangement of RNA-binding proteins on CDKN1B/p27Kip1 3’UTRs in cisplatin treated cells
V Iadevaia, MD Wouters, A Kanitz, AM Matia-González, EE Laing, ...
RNA biology 17 (1), 33-46, 2020
CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis
S Ghosh, M Ataman, M Bak, A Börsch, A Schmidt, K Buczak, G Martin, ...
Nucleic acids research 50 (6), 3096-3114, 2022
MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome
Y Wang, C Soneson, AL Malinowska, A Laski, S Ghosh, A Kanitz, ...
Nucleic Acids Research 49 (1), 25-37, 2021
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data
S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann, W Danecka, ...
RNA 29 (12), 1839-1855, 2023
Untargeted sequencing of circulating microRNAs in a healthy and diseased older population
L Streese, P Demougin, P Iborra, A Kanitz, A Deiseroth, JM Kröpfl, ...
Scientific reports 12 (1), 2991, 2022
Conserved regulation of RNA processing in somatic cell reprogramming
A Kanitz, AP Syed, K Kaji, M Zavolan
BMC genomics 20, 1-19, 2019
RO-Crate Metadata Specification 1.1
P Sefton, EÓ Carragáin, S Soiland-Reyes, O Corcho, D Garijo, R Palma, ...
researchobject. org, 2020
RNA splicing and its connection with other regulatory layers in somatic cell reprogramming
M Zavolan, A Kanitz
Current opinion in cell biology 52, 8-13, 2018
MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans
A Sendoel, D Subasic, L Ducoli, M Keller, E Michel, I Kohler, KD Singh, ...
Cell Death & Differentiation 26 (10), 2157-2178, 2019
ZARP: A user-friendly and versatile RNA-seq analysis workflow
M Katsantoni, F Gypas, CJ Herrmann, D Burri, M Bąk, P Iborra, K Agarwal, ...
F1000Research 13, 533, 2024
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Straipsniai 1–20