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Samuel Chaffron
Samuel Chaffron
LS2N - CNRS UMR 6004 - Nantes University
Verified email at univ-nantes.fr - Homepage
Title
Cited by
Cited by
Year
STRING 8—a global view on proteins and their functional interactions in 630 organisms
LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ...
Nucleic acids research 37 (suppl_1), D412-D416, 2009
29092009
Structure and function of the global ocean microbiome
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Science 348 (6237), 1261359, 2015
24322015
Population-level analysis of gut microbiome variation
G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ...
Science 352 (6285), 560-564, 2016
21502016
Eukaryotic plankton diversity in the sunlit ocean
C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ...
Science 348 (6237), 1261605, 2015
17622015
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota
B Stecher, R Robbiani, AW Walker, AM Westendorf, M Barthel, M Kremer, ...
PLoS biology 5 (10), e244, 2007
11832007
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
N Delmotte, C Knief, S Chaffron, G Innerebner, B Roschitzki, ...
Proceedings of the National Academy of Sciences 106 (38), 16428-16433, 2009
9232009
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 1262073, 2015
8742015
STRING 7—recent developments in the integration and prediction of protein interactions
C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ...
Nucleic acids research 35 (suppl_1), D358-D362, 2007
7982007
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
C Knief, N Delmotte, S Chaffron, M Stark, G Innerebner, R Wassmann, ...
The ISME journal 6 (7), 1378-1390, 2012
7392012
Plankton networks driving carbon export in the oligotrophic ocean
L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ...
Nature 532 (7600), 465-470, 2016
7182016
Patterns and ecological drivers of ocean viral communities
JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ...
Science 348 (6237), 1261498, 2015
6802015
A global network of coexisting microbes from environmental and whole-genome sequence data
S Chaffron, H Rehrauer, J Pernthaler, C Von Mering
Genome research 20 (7), 947-959, 2010
5262010
Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria
B Stecher, S Chaffron, R Käppeli, S Hapfelmeier, S Freedrich, TC Weber, ...
PLoS pathogens 6 (1), e1000711, 2010
4882010
The Microbiota Mediates Pathogen Clearance from the Gut Lumen after Non-Typhoidal Salmonella Diarrhea
K Endt, B Stecher, S Chaffron, E Slack, N Tchitchek, A Benecke, ...
PLoS pathogens 6 (9), e1001097, 2010
4082010
Species–function relationships shape ecological properties of the human gut microbiome
S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ...
Nature microbiology 1 (8), 1-8, 2016
3442016
The use of next generation sequencing for improving food safety: Translation into practice
B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet, A Winkler, Y Xiao, ...
Food microbiology 79, 96-115, 2019
3032019
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota
RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ...
Gut 68 (7), 1180-1189, 2019
1912019
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
AA Zayed, JM Wainaina, G Dominguez-Huerta, E Pelletier, J Guo, ...
Science 376 (6589), 156-162, 2022
1582022
Tara Oceans coordinators
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon …, 2015
1482015
Mechanically induced development and maturation of human intestinal organoids in vivo
HM Poling, D Wu, N Brown, M Baker, TA Hausfeld, N Huynh, S Chaffron, ...
Nature biomedical engineering 2 (6), 429-442, 2018
1012018
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