Samuel Chaffron

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Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerified email at imls.uzh.ch
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Damien EveillardNantes Université, Centrale Nantes, CNRS, LS2N, Université de NantesVerified email at univ-nantes.fr
Chris BowlerCNRS Director of Research, IBENS, Paris / President of the Stazione Zoologica Anton Dohrn, NaplesVerified email at biologie.ens.fr
Michael Kuhnresearch staff scientist & research coordinator in the lab of Peer Bork, EMBLVerified email at embl.de
Jeroen RaesProfessor, Faculty of Medicine, Rega Institute, KU Leuven; Group Leader Microbiome, VIB, BelgiumVerified email at med.kuleuven.be
Bärbel StecherProfessor of Microbiology, Ludwig-Maximilians-University MunichVerified email at mvp.lmu.de
Wolf-Dietrich HardtProfessor für Mikrobiologie, ETH ZurichVerified email at micro.biol.ethz.ch
Lars Juhl JensenUniversity of CopenhagenVerified email at cpr.ku.dk
Karsenti EricSenior scientist EMBLVerified email at embl.de
Silvia G. AcinasDepartment of Marine Biology and Oceanography; Institute of Marine Sciences (ICM)-CSICVerified email at icm.csic.es
Lionel GuidiCNRS, Sorbonne University, Laboratoire d'oceanographie de VillefrancheVerified email at imev-mer.fr
Youssef DarziIndependentVerified email at omixer.io
Vorholt Julia A.ETH ZurichVerified email at micro.biol.ethz.ch
Dr. Nathanaël DelmotteVerified email at alumni.ethz.ch
Claudia KniefUniversity of BonnVerified email at uni-bonn.de
Nicolas HenryStation Biologique de Roscoff, ABIMS bioinformatic platform, FranceVerified email at sb-roscoff.fr
Philippe JulienCenter for Genomic Regulation (CRG - Barcelona)Verified email at unil.ch
Milan SimonovićScientific programmer, University of ZürichVerified email at imls.uzh.ch
Chris CreeveyProfessor of Computational Biology, Queen’s University BelfastVerified email at qub.ac.uk

Samuel Chaffron

LS2N - CNRS UMR 6004 - Nantes University

Verified email at univ-nantes.fr - Homepage

Computational Biology Systems Ecology Microbial ecology and evolution Microbiomes


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STRING 8—a global view on proteins and their functional interactions in 630 organisms LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ... Nucleic acids research 37 (suppl_1), D412-D416, 2009	2971	2009
Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015	2627	2015
Population-level analysis of gut microbiome variation G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ... Science 352 (6285), 560-564, 2016	2335	2016
Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 1261605, 2015	1885	2015
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota B Stecher, R Robbiani, AW Walker, AM Westendorf, M Barthel, M Kremer, ... PLoS biology 5 (10), e244, 2007	1234	2007
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria N Delmotte, C Knief, S Chaffron, G Innerebner, B Roschitzki, ... Proceedings of the National Academy of Sciences 106 (38), 16428-16433, 2009	955	2009
Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015	928	2015
STRING 7—recent developments in the integration and prediction of protein interactions C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ... Nucleic acids research 35 (suppl_1), D358-D362, 2007	814	2007
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016	798	2016
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice C Knief, N Delmotte, S Chaffron, M Stark, G Innerebner, R Wassmann, ... The ISME journal 6 (7), 1378-1390, 2012	776	2012
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 1261498, 2015	725	2015
A global network of coexisting microbes from environmental and whole-genome sequence data S Chaffron, H Rehrauer, J Pernthaler, C Von Mering Genome research 20 (7), 947-959, 2010	550	2010
Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria B Stecher, S Chaffron, R Käppeli, S Hapfelmeier, S Freedrich, TC Weber, ... PLoS pathogens 6 (1), e1000711, 2010	502	2010
The Microbiota Mediates Pathogen Clearance from the Gut Lumen after Non-Typhoidal Salmonella Diarrhea K Endt, B Stecher, S Chaffron, E Slack, N Tchitchek, A Benecke, ... PLoS pathogens 6 (9), e1001097, 2010	419	2010
Species–function relationships shape ecological properties of the human gut microbiome S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ... Nature microbiology 1 (8), 1-8, 2016	384	2016
The use of next generation sequencing for improving food safety: Translation into practice B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet, A Winkler, Y Xiao, ... Food microbiology 79, 96-115, 2019	363	2019
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ... Gut 68 (7), 1180-1189, 2019	221	2019
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome AA Zayed, JM Wainaina, G Dominguez-Huerta, E Pelletier, J Guo, ... Science 376 (6589), 156-162, 2022	191	2022
Tara Oceans coordinators S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon …, 2015	155	2015
Mechanically induced development and maturation of human intestinal organoids in vivo HM Poling, D Wu, N Brown, M Baker, TA Hausfeld, N Huynh, S Chaffron, ... Nature biomedical engineering 2 (6), 429-442, 2018	113	2018

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