DelPhi: a comprehensive suite for DelPhi software and associated resources L Li, C Li, S Sarkar, J Zhang, S Witham, Z Zhang, L Wang, N Smith, ... BMC biophysics 5, 1-11, 2012 | 378 | 2012 |
Molecular mechanisms of disease-causing missense mutations S Stefl, H Nishi, M Petukh, AR Panchenko, E Alexov Journal of molecular biology 425 (21), 3919-3936, 2013 | 318 | 2013 |
Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins TG Kucukkal, M Petukh, L Li, E Alexov Current opinion in structural biology 32, 18-24, 2015 | 212 | 2015 |
A mutation in a ganglioside biosynthetic enzyme, ST3GAL5, results in salt & pepper syndrome, a neurocutaneous disorder with altered glycolipid and glycoprotein … L Boccuto, K Aoki, H Flanagan-Steet, CF Chen, X Fan, F Bartel, M Petukh, ... Human molecular genetics 23 (2), 418-433, 2014 | 187 | 2014 |
On human disease‐causing amino acid variants: Statistical study of sequence and structural patterns M Petukh, TG Kucukkal, E Alexov Human mutation 36 (5), 524-534, 2015 | 151 | 2015 |
Predicting the impact of missense mutations on protein–protein binding affinity M Li, M Petukh, E Alexov, AR Panchenko Journal of chemical theory and computation 10 (4), 1770-1780, 2014 | 120 | 2014 |
Predicting binding free energy change caused by point mutations with knowledge-modified MM/PBSA method M Petukh, M Li, E Alexov PLoS computational biology 11 (7), e1004276, 2015 | 114 | 2015 |
The role of protonation states in ligand-receptor recognition and binding M Petukh, S Stefl, E Alexov Current pharmaceutical design 19 (23), 4182-4190, 2013 | 106 | 2013 |
SAAFEC: predicting the effect of single point mutations on protein folding free energy using a knowledge-modified MM/PBSA approach I Getov, M Petukh, E Alexov International journal of molecular sciences 17 (4), 512, 2016 | 92 | 2016 |
SAAMBE: webserver to predict the charge of binding free energy caused by amino acids mutations M Petukh, L Dai, E Alexov International journal of molecular sciences 17 (4), 547, 2016 | 79 | 2016 |
How bacterial chemoreceptors evolve novel ligand specificities JA Gavira, VM Gumerov, M Rico-Jiménez, M Petukh, AA Upadhyay, ... MBio 11 (1), 10.1128/mbio. 03066-19, 2020 | 56 | 2020 |
DelPhi suite: new developments and review of functionalities C Li, Z Jia, A Chakravorty, S Pahari, Y Peng, S Basu, M Koirala, ... Journal of computational chemistry 40 (28), 2502-2508, 2019 | 53 | 2019 |
Progress in developing Poisson-Boltzmann equation solvers C Li, L Li, M Petukh, E Alexov Computational and Mathematical Biophysics 1 (2013), 42-62, 2013 | 47 | 2013 |
Predicting nonspecific ion binding using DelPhi M Petukh, M Zhenirovskyy, C Li, L Li, L Wang, E Alexov Biophysical journal 102 (12), 2885-2893, 2012 | 38 | 2012 |
Ion binding to biological macromolecules M Petukh, E Alexov Asian journal of physics: an international quarterly research journal 23 (5 …, 2014 | 32 | 2014 |
Continuous development of schemes for parallel computing of the electrostatics in biological systems: Implementation in DelPhi C Li, M Petukh, L Li, E Alexov Journal of computational chemistry 34 (22), 1949-1960, 2013 | 29 | 2013 |
A rational free energy-based approach to understanding and targeting disease-causing missense mutations Z Zhang, S Witham, M Petukh, G Moroy, M Miteva, Y Ikeguchi, E Alexov Journal of the American Medical Informatics Association 20 (4), 643-651, 2013 | 27 | 2013 |
BION web server: predicting non-specifically bound surface ions M Petukh, T Kimmet, E Alexov Bioinformatics 29 (6), 805-806, 2013 | 22 | 2013 |
Chronic beryllium disease: revealing the role of beryllium ion and small peptides binding to HLA-DP2 M Petukh, B Wu, S Stefl, N Smith, D Hyde-Volpe, L Wang, E Alexov PLoS One 9 (11), e111604, 2014 | 20 | 2014 |
ProBLM web server: protein and membrane placement and orientation package T Kimmett, N Smith, S Witham, M Petukh, S Sarkar, E Alexov Computational and Mathematical Methods in Medicine 2014 (1), 838259, 2014 | 17 | 2014 |