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Melanie Barker Berkmen
Melanie Barker Berkmen
Verified email at suffolk.edu - Homepage
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Cited by
Year
DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP
BJ Paul, MM Barker, W Ross, DA Schneider, C Webb, JW Foster, ...
Cell 118 (3), 311-322, 2004
6152004
Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro
MM Barker, T Gaal, CA Josaitis, RL Gourse
Journal of molecular biology 305 (4), 673-688, 2001
4562001
DksA potentiates direct activation of amino acid promoters by ppGpp
BJ Paul, MB Berkmen, RL Gourse
Proceedings of the National Academy of Sciences 102 (22), 7823-7828, 2005
4182005
Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP
MM Barker, T Gaal, RL Gourse
Journal of molecular biology 305 (4), 689-702, 2001
2732001
rRNA promoter regulation by nonoptimal binding of σ region 1.2: an additional recognition element for RNA polymerase
SP Haugen, MB Berkmen, W Ross, T Gaal, C Ward, RL Gourse
Cell 125 (6), 1069-1082, 2006
2682006
Cytoplasmic pH response to acid stress in individual cells of Escherichia coli and Bacillus subtilis observed by fluorescence ratio imaging microscopy
KA Martinez, RD Kitko, JP Mershon, HE Adcox, KA Malek, MB Berkmen, ...
Applied and environmental microbiology 78 (10), 3706-3714, 2012
1272012
Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis
JD Wang, MB Berkmen, AD Grossman
Proceedings of the National Academy of Sciences 104 (13), 5608-5613, 2007
1212007
Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation
CE Vrentas, T Gaal, MB Berkmen, ST Rutherford, SP Haugen, W Ross, ...
Journal of molecular biology 377 (2), 551-564, 2008
1062008
Spatial and temporal organization of the Bacillus subtilis replication cycle
MB Berkmen, AD Grossman
Molecular microbiology 62 (1), 57-71, 2006
932006
Efficient gene transfer in bacterial cell chains
A Babic, MB Berkmen, CA Lee, AD Grossman
MBio 2 (2), 10.1128/mbio. 00027-11, 2011
79*2011
Regulation of rRNA transcription correlates with nucleoside triphosphate sensing
MM Barker, RL Gourse
Journal of Bacteriology 183 (21), 6315-6323, 2001
782001
Biology of ICEBs1, an integrative and conjugative element in Bacillus subtilis
JM Auchtung, N Aleksanyan, A Bulku, MB Berkmen
Plasmid 86, 14-25, 2016
562016
Cytoplasmic Acidification and the Benzoate Transcriptome in Bacillus subtilis
RD Kitko, RL Cleeton, EI Armentrout, GE Lee, K Noguchi, MB Berkmen, ...
PLoS One 4 (12), e8255, 2009
542009
Polar Positioning of a Conjugation Protein from the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis
MB Berkmen, CA Lee, EK Loveday, AD Grossman
Journal of Bacteriology 192 (1), 38-45, 2010
462010
Subcellular positioning of the origin region of the Bacillus subtilis chromosome is independent of sequences within oriC, the site of replication initiation, and the …
MB Berkmen, AD Grossman
Molecular microbiology 63 (1), 150-165, 2007
462007
An idea to explore: Use of augmented reality for teaching three‐dimensional biomolecular structures
CN Peterson, SZ Tavana, OP Akinleye, WH Johnson, MB Berkmen
Biochemistry and Molecular Biology Education 48 (3), 276-282, 2020
442020
Strength and regulation without transcription factors: lessons from bacterial rRNA promoters
RL Gourse, T Gaal, SE Aiyar, MM Barker, ST Estrem, CA Hirvonen, ...
Cold Spring Harbor symposia on quantitative biology 63, 131-140, 1998
351998
Critical Components of the Conjugation Machinery of the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis
CT Leonetti, MA Hamada, SJ Laurer, MP Broulidakis, KJ Swerdlow, ...
Journal of Bacteriology 197 (15), 2558-2567, 2015
322015
Multicopy Plasmids Affect Replisome Positioning in Bacillus subtilis
JD Wang, ME Rokop, MM Barker, NR Hanson, AD Grossman
Journal of bacteriology 186 (21), 7084-7090, 2004
232004
Biochemical characterization of two clinically-relevant human fumarase variants defective for oligomerization
A Bulku, TM Weaver, MB Berkmen
The Open Biochemistry Journal 12, 1, 2018
182018
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Articles 1–20