DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP BJ Paul, MM Barker, W Ross, DA Schneider, C Webb, JW Foster, ... Cell 118 (3), 311-322, 2004 | 615 | 2004 |
Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro MM Barker, T Gaal, CA Josaitis, RL Gourse Journal of molecular biology 305 (4), 673-688, 2001 | 456 | 2001 |
DksA potentiates direct activation of amino acid promoters by ppGpp BJ Paul, MB Berkmen, RL Gourse Proceedings of the National Academy of Sciences 102 (22), 7823-7828, 2005 | 418 | 2005 |
Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP MM Barker, T Gaal, RL Gourse Journal of molecular biology 305 (4), 689-702, 2001 | 273 | 2001 |
rRNA promoter regulation by nonoptimal binding of σ region 1.2: an additional recognition element for RNA polymerase SP Haugen, MB Berkmen, W Ross, T Gaal, C Ward, RL Gourse Cell 125 (6), 1069-1082, 2006 | 268 | 2006 |
Cytoplasmic pH response to acid stress in individual cells of Escherichia coli and Bacillus subtilis observed by fluorescence ratio imaging microscopy KA Martinez, RD Kitko, JP Mershon, HE Adcox, KA Malek, MB Berkmen, ... Applied and environmental microbiology 78 (10), 3706-3714, 2012 | 127 | 2012 |
Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis JD Wang, MB Berkmen, AD Grossman Proceedings of the National Academy of Sciences 104 (13), 5608-5613, 2007 | 121 | 2007 |
Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation CE Vrentas, T Gaal, MB Berkmen, ST Rutherford, SP Haugen, W Ross, ... Journal of molecular biology 377 (2), 551-564, 2008 | 106 | 2008 |
Spatial and temporal organization of the Bacillus subtilis replication cycle MB Berkmen, AD Grossman Molecular microbiology 62 (1), 57-71, 2006 | 93 | 2006 |
Efficient gene transfer in bacterial cell chains A Babic, MB Berkmen, CA Lee, AD Grossman MBio 2 (2), 10.1128/mbio. 00027-11, 2011 | 79* | 2011 |
Regulation of rRNA transcription correlates with nucleoside triphosphate sensing MM Barker, RL Gourse Journal of Bacteriology 183 (21), 6315-6323, 2001 | 78 | 2001 |
Biology of ICEBs1, an integrative and conjugative element in Bacillus subtilis JM Auchtung, N Aleksanyan, A Bulku, MB Berkmen Plasmid 86, 14-25, 2016 | 56 | 2016 |
Cytoplasmic Acidification and the Benzoate Transcriptome in Bacillus subtilis RD Kitko, RL Cleeton, EI Armentrout, GE Lee, K Noguchi, MB Berkmen, ... PLoS One 4 (12), e8255, 2009 | 54 | 2009 |
Polar Positioning of a Conjugation Protein from the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis MB Berkmen, CA Lee, EK Loveday, AD Grossman Journal of Bacteriology 192 (1), 38-45, 2010 | 46 | 2010 |
Subcellular positioning of the origin region of the Bacillus subtilis chromosome is independent of sequences within oriC, the site of replication initiation, and the … MB Berkmen, AD Grossman Molecular microbiology 63 (1), 150-165, 2007 | 46 | 2007 |
An idea to explore: Use of augmented reality for teaching three‐dimensional biomolecular structures CN Peterson, SZ Tavana, OP Akinleye, WH Johnson, MB Berkmen Biochemistry and Molecular Biology Education 48 (3), 276-282, 2020 | 44 | 2020 |
Strength and regulation without transcription factors: lessons from bacterial rRNA promoters RL Gourse, T Gaal, SE Aiyar, MM Barker, ST Estrem, CA Hirvonen, ... Cold Spring Harbor symposia on quantitative biology 63, 131-140, 1998 | 35 | 1998 |
Critical Components of the Conjugation Machinery of the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis CT Leonetti, MA Hamada, SJ Laurer, MP Broulidakis, KJ Swerdlow, ... Journal of Bacteriology 197 (15), 2558-2567, 2015 | 32 | 2015 |
Multicopy Plasmids Affect Replisome Positioning in Bacillus subtilis JD Wang, ME Rokop, MM Barker, NR Hanson, AD Grossman Journal of bacteriology 186 (21), 7084-7090, 2004 | 23 | 2004 |
Biochemical characterization of two clinically-relevant human fumarase variants defective for oligomerization A Bulku, TM Weaver, MB Berkmen The Open Biochemistry Journal 12, 1, 2018 | 18 | 2018 |