DeepDist: real-value inter-residue distance prediction with deep residual convolutional network T Wu, Z Guo, J Hou, J Cheng BMC bioinformatics 22, 1-17, 2021 | 63 | 2021 |
Prediction of inter-chain distance maps of protein complexes with 2D attention-based deep neural networks Z Guo, J Liu, J Skolnick, J Cheng Nature communications 13 (1), 6963, 2022 | 47 | 2022 |
DNSS2: Improved ab initio protein secondary structure prediction using advanced deep learning architectures Z Guo, J Hou, J Cheng Proteins: Structure, Function, and Bioinformatics 89 (2), 207-217, 2021 | 44 | 2021 |
Combination of deep neural network with attention mechanism enhances the explainability of protein contact prediction C Chen, T Wu, Z Guo, J Cheng Proteins: Structure, Function, and Bioinformatics 89 (6), 697-707, 2021 | 34 | 2021 |
Resistance welding spot defect detection with convolutional neural networks Z Guo, S Ye, Y Wang, C Lin Computer Vision Systems: 11th International Conference, ICVS 2017, Shenzhen …, 2017 | 34 | 2017 |
The MULTICOM protein structure prediction server empowered by deep learning and contact distance prediction J Hou, T Wu, Z Guo, F Quadir, J Cheng Protein structure prediction, 13-26, 2020 | 26 | 2020 |
Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14 J Liu, T Wu, Z Guo, J Hou, J Cheng Proteins: Structure, Function, and Bioinformatics 90 (1), 58-72, 2022 | 21 | 2022 |
Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15 J Liu, Z Guo, T Wu, RS Roy, F Quadir, C Chen, J Cheng Communications Biology 6 (1), 1140, 2023 | 20 | 2023 |
Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment CC Andriy Kryshtafovych, John Moult, Wendy M Billings, Dennis Della Corte ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1987-1996, 2021 | 19 | 2021 |
Protein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14 X Chen, J Liu, Z Guo, T Wu, J Hou, J Cheng Scientific Reports 11 (1), 10943, 2021 | 18 | 2021 |
Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 17 | 2023 |
Diffusion models in bioinformatics and computational biology Z Guo, J Liu, Y Wang, M Chen, D Wang, D Xu, J Cheng Nature reviews bioengineering 2 (2), 136-154, 2024 | 14 | 2024 |
CAID Prediction Portal: A Comprehensive Service for Predicting Intrinsic Disorder and Binding Regions in Proteins DP Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel ... Nucleic Acids Research, 2023 | 14 | 2023 |
Distance‐based reconstruction of protein quaternary structures from inter‐chain contacts E Soltanikazemi, F Quadir, RS Roy, Z Guo, J Cheng Proteins: Structure, Function, and Bioinformatics 90 (3), 720-731, 2022 | 14 | 2022 |
A vision inspection system for the defects of resistance spot welding based on neural network S Ye, Z Guo, P Zheng, L Wang, C Lin Computer Vision Systems: 11th International Conference, ICVS 2017, Shenzhen …, 2017 | 14 | 2017 |
Diffusion models in bioinformatics: A new wave of deep learning revolution in action Z Guo, J Liu, Y Wang, M Chen, D Wang, D Xu, J Cheng arXiv preprint arXiv:2302.10907, 2023 | 13 | 2023 |
Improving AlphaFold2-based protein tertiary structure prediction with MULTICOM in CASP15 J Liu, Z Guo, T Wu, RS Roy, C Chen, J Cheng Communications Chemistry 6 (1), 188, 2023 | 12 | 2023 |
Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15 RS Roy, J Liu, N Giri, Z Guo, J Cheng Proteins: Structure, Function, and Bioinformatics 91 (12), 1889-1902, 2023 | 9 | 2023 |
Improving deep learning-based protein distance prediction in CASP14 Z Guo, T Wu, J Liu, J Hou, J Cheng Bioinformatics 37 (19), 3190-3196, 2021 | 9 | 2021 |
Atomic protein structure refinement using all-atom graph representations and SE (3)-equivariant graph transformer T Wu, Z Guo, J Cheng Bioinformatics 39 (5), btad298, 2023 | 7 | 2023 |