Xavier Periole
Xavier Periole
No verified email
Cited by
Cited by
The MARTINI Force Field
SJ Marrink, M Fuhrmans, HJ Risselada, X Periole
Coarse-Graining of Condensed Phase and Biomolecular Systems, 5, 2008
The MARTINI coarse-grained force field: extension to proteins
L Monticelli, SK Kandasamy, X Periole, RG Larson, DP Tieleman, ...
Journal of chemical theory and computation 4 (5), 819-834, 2008
Improved parameters for the martini coarse-grained protein force field
DH De Jong, G Singh, WFD Bennett, C Arnarez, TA Wassenaar, ...
Journal of chemical theory and computation 9 (1), 687-697, 2013
Combining an elastic network with a coarse-grained molecular force field: structure, dynamics, and intermolecular recognition
X Periole, M Cavalli, SJ Marrink, MA Ceruso
Journal of chemical theory and computation 5 (9), 2531-2543, 2009
The power of coarse graining in biomolecular simulations
HI Ingˇlfsson, CA Lopez, JJ Uusitalo, DH de Jong, SM Gopal, X Periole, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 4 (3), 225-248, 2014
G protein-coupled receptors self-assemble in dynamics simulations of model bilayers
X Periole, T Huber, SJ Marrink, TP Sakmar
Journal of the American Chemical Society 129 (33), 10126-10132, 2007
Structural determinants of the supramolecular organization of G protein-coupled receptors in bilayers
X Periole, AM Knepp, TP Sakmar, SJ Marrink, T Huber
Journal of the American Chemical Society 134 (26), 10959-10965, 2012
Identification of cardiolipin binding sites on cytochrome c oxidase at the entrance of proton channels
C Arnarez, SJ Marrink, X Periole
Scientific reports 3 (1), 1263, 2013
Evidence for Cardiolipin Binding Sites on the Membrane-Exposed Surface of the Cytochrome bc1
C Arnarez, JP Mazat, J Elezgaray, SJ Marrink, X Periole
Journal of the American Chemical Society 135 (8), 3112-3120, 2013
The Martini coarse-grained force field
X Periole, SJ Marrink
Biomolecular simulations: Methods and protocols, 533-565, 2013
Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent
X Periole, AE Mark
The Journal of chemical physics 126 (1), 2007
Refining homology models by combining replica‐exchange molecular dynamics and statistical potentials
J Zhu, H Fan, X Periole, B Honig, AE Mark
Proteins: Structure, Function, and Bioinformatics 72 (4), 1171-1188, 2008
Improved angle potentials for coarse-grained molecular dynamics simulations
M Bulacu, N Goga, W Zhao, G Rossi, L Monticelli, X Periole, DP Tieleman, ...
Journal of chemical theory and computation 9 (8), 3282-3292, 2013
Comment on “On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models” by M. Winger, D. Trzesniak, R. Baron and WF vaná…
SJ Marrink, X Periole, DP Tieleman, AH de Vries
Physical Chemistry Chemical Physics 12 (9), 2254-2256, 2010
Rhodopsin forms a dimer with cytoplasmic helix 8 contacts in native membranes
AM Knepp, X Periole, SJ Marrink, TP Sakmar, T Huber
Biochemistry 51 (9), 1819-1821, 2012
Factors that affect the degree of twist in β-sheet structures: a molecular dynamics simulation study of a cross-β filament of the GNNQQNY peptide
X Periole, A Rampioni, M Vendruscolo, AE Mark
The Journal of Physical Chemistry B 113 (6), 1728-1737, 2009
Simple Two-Body Cation−Water Interaction Potentials Derived from ab Initio Calculations. Comparison to Results Obtained with an Empirical Approach
X Periole, D Allouche, JP Daudey, YH Sanejouand
The Journal of Physical Chemistry B 101 (25), 5018-5025, 1997
Key issues in the computational simulation of GPCR function: representation of loop domains
EL Mehler, X Periole, SA Hassan, H Weinstein
Journal of Computer-Aided Molecular Design 16, 841-853, 2002
Molecular dynamics simulations of transducin: interdomain and front to back communication in activation and nucleotide exchange
MA Ceruso, X Periole, H Weinstein
Journal of molecular biology 338 (3), 469-481, 2004
Dimerization of amino acid side chains: lessons from the comparison of different force fields
DH de Jong, X Periole, SJ Marrink
Journal of Chemical Theory and Computation 8 (3), 1003-1014, 2012
The system can't perform the operation now. Try again later.
Articles 1–20