| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17617 | 2012 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1 Nature 432 (7018), 695-716, 2004 | 2971 | 2004 |
| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 2270 | 2021 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 2028 | 2014 |
| Improved pairwise alignment of genomic DNA RS Harris The Pennsylvania State University, 2007 | 1749 | 2007 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 1499 | 2011 |
| Genome analysis of the platypus reveals unique signatures of evolution Nature 453 (7192), 175-183, 2008 | 781 | 2008 |
| Comparative and demographic analysis of orang-utan genomes DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ... Nature 469 (7331), 529-533, 2011 | 714 | 2011 |
| Integrative annotation of chromatin elements from ENCODE data MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ... Nucleic acids research 41 (2), 827-841, 2013 | 634 | 2013 |
| Complete Khoisan and Bantu genomes from southern Africa SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ... Nature 463 (7283), 943-947, 2010 | 541 | 2010 |
| Progressive Cactus is a multiple-genome aligner for the thousand-genome era J Armstrong, G Hickey, M Diekhans, IT Fiddes, AM Novak, A Deran, ... Nature 587 (7833), 246-251, 2020 | 434 | 2020 |
| 28-way vertebrate alignment and conservation track in the UCSC Genome Browser W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ... Genome research 17 (12), 1797-1808, 2007 | 325 | 2007 |
| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... Nature 621 (7978), 344-354, 2023 | 277 | 2023 |
| Alignathon: a competitive assessment of whole-genome alignment methods D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ... Genome research 24 (12), 2077-2089, 2014 | 129 | 2014 |
| Accurate typing of short tandem repeats from genome-wide sequencing data and its applications A Fungtammasan, G Ananda, SE Hile, MSW Su, C Sun, R Harris, ... Genome research 25 (5), 736-749, 2015 | 113 | 2015 |
| A time-and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y M Tomaszkiewicz, S Rangavittal, M Cechova, RC Sanchez, ... Genome research 26 (4), 530-540, 2016 | 111 | 2016 |
| Non-B DNA: a major contributor to small-and large-scale variation in nucleotide substitution frequencies across the genome WM Guiblet, MA Cremona, RS Harris, D Chen, KA Eckert, F Chiaromonte, ... Nucleic Acids Research 49 (3), 1497-1516, 2021 | 96 | 2021 |
| Allsome sequence bloom trees C Sun, RS Harris, R Chikhi, P Medvedev International Conference on Research in Computational Molecular Biology, 272-286, 2017 | 71 | 2017 |
| Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate WM Guiblet, MA Cremona, M Cechova, RS Harris, I Kejnovská, ... Genome Research 28 (12), 1767-1778, 2018 | 67 | 2018 |
| Improved representation of sequence Bloom trees RS Harris, P Medvedev Bioinformatics, 2019 | 60 | 2019 |
