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Eugene Kapp
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A common open representation of mass spectrometry data and its application to proteomics research
PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ...
Nature biotechnology 22 (11), 1459-1466, 2004
9712004
Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 …
GS Omenn, DJ States, M Adamski, TW Blackwell, R Menon, H Hermjakob, ...
Proteomics 5 (13), 3226-3245, 2005
9372005
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis
EA Kapp, F Schütz, LM Connolly, JA Chakel, JE Meza, CA Miller, D Fenyo, ...
Proteomics 5 (13), 3475-3490, 2005
4662005
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics
AW Bell, EW Deutsch, CE Au, RE Kearney, R Beavis, S Sechi, T Nilsson, ...
Nature methods 6 (6), 423-430, 2009
4052009
An aspartyl protease directs malaria effector proteins to the host cell
JA Boddey, AN Hodder, S Günther, PR Gilson, H Patsiouras, EA Kapp, ...
Nature 463 (7281), 627-631, 2010
3882010
Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation
EA Kapp, F Schütz, GE Reid, JS Eddes, RL Moritz, RAJ O'Hair, TP Speed, ...
Analytical Chemistry 75 (22), 6251-6264, 2003
3342003
Oncogenic H-ras reprograms Madin-Darby canine kidney (MDCK) cell-derived exosomal proteins following epithelial-mesenchymal transition
BJ Tauro, RA Mathias, DW Greening, SK Gopal, H Ji, EA Kapp, ...
Molecular & cellular proteomics 12 (8), 2148-2159, 2013
2092013
A proteome strategy for fractionating proteins and peptides using continuous free-flow electrophoresis coupled off-line to reversed-phase high-performance liquid chromatography
RL Moritz, H Ji, F Schütz, LM Connolly, EA Kapp, TP Speed, RJ Simpson
Analytical chemistry 76 (16), 4811-4824, 2004
1412004
Overview of tandem mass spectrometry (MS/MS) database search algorithms
E Kapp, F Schütz
Current Protocols in Protein Science 49 (1), 25.2. 1-25.2. 19, 2007
1092007
Quantitative in vivo Analyses Reveal Calcium-dependent Phosphorylation Sites and Identifies a Novel Component of the Toxoplasma Invasion Motor Complex
T Nebl, JH Prieto, E Kapp, BJ Smith, MJ Williams, JR Yates 3rd, ...
PLoS pathogens 7 (9), e1002222, 2011
1012011
Statistical and mechanistic approaches to understanding the gas-phase fragmentation behavior of methionine sulfoxide containing peptides
GE Reid, KD Roberts, EA Kapp, RJ Simpson
Journal of proteome research 3 (4), 751-759, 2004
962004
Difference gel electrophoresis analysis of Ras‐transformed fibroblast cell‐derived exosomes
H Ji, N Erfani, BJ Tauro, EA Kapp, HJ Zhu, RL Moritz, JWE Lim, ...
Electrophoresis 29 (12), 2660-2671, 2008
912008
Secretome-based proteomic profiling of Ras-transformed MDCK cells reveals extracellular modulators of epithelial-mesenchymal transition
RA Mathias, B Wang, H Ji, EA Kapp, RL Moritz, HJ Zhu, RJ Simpson
Journal of proteome research 8 (6), 2827-2837, 2009
832009
Characterization and identification of dityrosine cross-linked peptides using tandem mass spectrometry
S Mukherjee, EA Kapp, A Lothian, AM Roberts, YV Vasil’ev, BA Boughton, ...
Analytical Chemistry 89 (11), 6136-6145, 2017
772017
Application of 2‐D free‐flow electrophoresis/RP‐HPLC for proteomic analysis of human plasma depleted of multi high‐abundance proteins
RL Moritz, AB Clippingdale, EA Kapp, JS Eddes, H Ji, S Gilbert, ...
Proteomics 5 (13), 3402-3413, 2005
732005
Deriving statistical models for predicting peptide tandem MS product ion intensities
F Schütz, EA Kapp, RJ Simpson, TP Speed
Biochemical Society Transactions 31 (6), 1479-1483, 2003
692003
CHOMPER: A bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high‐throughput proteomic strategies
JS Eddes, EA Kapp, DF Frecklington, LM Connolly, MJ Layton, RL Moritz, ...
PROTEOMICS: International Edition 2 (9), 1097-1103, 2002
682002
Extracellular remodelling during oncogenic Ras-induced epithelial-mesenchymal transition facilitates MDCK cell migration
RA Mathias, YS Chen, B Wang, H Ji, EA Kapp, RL Moritz, HJ Zhu, ...
Journal of proteome research 9 (2), 1007-1019, 2010
662010
Differential expression of pathogen-recognition molecules between dendritic cell subsets revealed by plasma membrane proteomic analysis
E Segura, E Kapp, N Gupta, J Wong, J Lim, H Ji, WR Heath, R Simpson, ...
Molecular immunology 47 (9), 1765-1773, 2010
622010
Selenium levels in serum, red blood cells, and cerebrospinal fluid of Alzheimer’s disease patients: a report from the Australian Imaging, Biomarker & Lifestyle Flagship Study …
BR Cardoso, DJ Hare, AI Bush, QX Li, CJ Fowler, CL Masters, RN Martins, ...
Journal of Alzheimer's Disease 57 (1), 183-193, 2017
582017
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