Manuel N. Melo
Manuel N. Melo
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MDAnalysis: a Python package for the rapid analysis of molecular dynamics simulations
RJ Gowers, M Linke, J Barnoud, TJE Reddy, MN Melo, SL Seyler, ...
Los Alamos National lab.(LANL), Los Alamos, NM (United States), 2019
Lipid organization of the plasma membrane
HI Ingólfsson, MN Melo, FJ Van Eerden, C Arnarez, CA Lopez, ...
Journal of the american chemical society 136 (41), 14554-14559, 2014
Antimicrobial peptides: linking partition, activity and high membrane-bound concentrations
MN Melo, R Ferre, MARB Castanho
Nature Reviews Microbiology 7 (3), 245-250, 2009
Cell-penetrating peptides and antimicrobial peptides: how different are they?
ST Henriques, MN Melo, MARB Castanho
Biochemical Journal 399 (1), 1-7, 2006
Dry Martini, a coarse-grained force field for lipid membrane simulations with implicit solvent
C Arnarez, JJ Uusitalo, MF Masman, HI Ingólfsson, DH De Jong, MN Melo, ...
Journal of chemical theory and computation 11 (1), 260-275, 2015
Lipid–protein interactions are unique fingerprints for membrane proteins
V Corradi, E Mendez-Villuendas, HI Ingólfsson, RX Gu, I Siuda, MN Melo, ...
ACS central science 4 (6), 709-717, 2018
Escherichia coli cell surface perturbation and disruption induced by antimicrobial peptides BP100 and pepR
CS Alves, MN Melo, HG Franquelim, R Ferre, M Planas, L Feliu, E Bardají, ...
Journal of Biological Chemistry 285 (36), 27536-27544, 2010
Pitfalls of the Martini model
R Alessandri, PCT Souza, S Thallmair, MN Melo, AH De Vries, SJ Marrink
Journal of chemical theory and computation 15 (10), 5448-5460, 2019
Ceramides bind VDAC2 to trigger mitochondrial apoptosis
S Dadsena, S Bockelmann, JGM Mina, DG Hassan, S Korneev, ...
Nature communications 10 (1), 1832, 2019
Hsc70-4 deforms membranes to promote synaptic protein turnover by endosomal microautophagy
V Uytterhoeven, E Lauwers, I Maes, K Miskiewicz, MN Melo, J Swerts, ...
Neuron 88 (4), 735-748, 2015
Parameters for Martini sterols and hopanoids based on a virtual-site description
MN Melo, HI Ingólfsson, SJ Marrink
The Journal of chemical physics 143 (24), 2015
Synergistic effects of the membrane actions of cecropin-melittin antimicrobial hybrid peptide BP100
R Ferre, MN Melo, AD Correia, L Feliu, E Bardají, M Planas, M Castanho
Biophysical journal 96 (5), 1815-1827, 2009
Using zeta-potential measurements to quantify peptide partition to lipid membranes
JM Freire, MM Domingues, J Matos, MN Melo, AS Veiga, NC Santos, ...
European biophysics journal 40, 481-487, 2011
Omiganan pentahydrochloride in the front line of clinical applications of antimicrobial peptides
MN Melo, D Dugourd, MARB Castanho
Recent patents on anti-infective drug discovery 1 (2), 201-207, 2006
Two decades of Martini: Better beads, broader scope
SJ Marrink, L Monticelli, MN Melo, R Alessandri, DP Tieleman, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 13 (1), e1620, 2023
Adaptive resolution simulation of an atomistic protein in MARTINI water
J Zavadlav, MN Melo, SJ Marrink, M Praprotnik
The Journal of chemical physics 140 (5), 2014
Exchange pathways of plastoquinone and plastoquinol in the photosystem II complex
FJ Van Eerden, MN Melo, PWJM Frederix, X Periole, SJ Marrink
Nature communications 8 (1), 15214, 2017
Omiganan interaction with bacterial membranes and cell wall models. Assigning a biological role to saturation
MN Melo, MARB Castanho
Biochimica et Biophysica Acta (BBA)-Biomembranes 1768 (5), 1277-1290, 2007
Adaptive resolution simulation of MARTINI solvents
J Zavadlav, MN Melo, AV Cunha, AH De Vries, SJ Marrink, M Praprotnik
Journal of Chemical Theory and Computation 10 (6), 2591-2598, 2014
Interaction of the dengue virus fusion peptide with membranes assessed by NMR: the essential role of the envelope protein Trp101 for membrane fusion
MN Melo, FJR Sousa, FA Carneiro, MARB Castanho, AP Valente, ...
Journal of Molecular Biology 392 (3), 736-746, 2009
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