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Ivaylo Ivanov
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Cited by
Year
Hydrogen bonding in water
B Chen, I Ivanov, ML Klein, M Parrinello
Physical Review Letters 91 (21), 215503, 2003
4032003
Near-atomic resolution visualization of human transcription promoter opening
Y He, C Yan, J Fang, C Inouye, R Tjian, I Ivanov, E Nogales
Nature 533, 359–365, 2016
2912016
Synthetic mimics of antimicrobial peptides
A Som, S Vemparala, I Ivanov, GN Tew
Peptide Science 90 (2), 83-93, 2008
1912008
Characterizing loop dynamics and ligand recognition in human-and avian-type influenza neuraminidases via generalized born molecular dynamics and end-point free energy calculations
RE Amaro, X Cheng, I Ivanov, D Xu, JA McCammon
Journal of the American Chemical Society 131 (13), 4702-4709, 2009
1512009
Solvation Structure and Mobility Mechanism of OH-:  A Car−Parrinello Molecular Dynamics Investigation of Alkaline Solutions
B Chen, I Ivanov, JM Park, M Parrinello, ML Klein
The Journal of Physical Chemistry B 106 (46), 12006-12016, 2002
1142002
A new structural framework for integrating replication protein A into DNA processing machinery
CA Brosey, C Yan, SE Tsutakawa, WT Heller, RP Rambo, JA Tainer, ...
Nucleic Acids Research, 2013
1132013
Natural product micheliolide (MCL) irreversibly activates pyruvate kinase M2 and suppresses leukemia
J Li, S Li, J Guo, Q Li, J Long, C Ma, Y Ding, C Yan, L Li, Z Wu, H Zhu, ...
Journal of medicinal chemistry 61 (9), 4155-4164, 2018
1082018
Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV
I Ivanov, JA Tainer, JA McCammon
Proceedings of the National Academy of Sciences 104 (5), 1465-1470, 2007
1032007
Characterization of nonbiological antimicrobial polymers in aqueous solution and at water− lipid interfaces from all-atom molecular dynamics
I Ivanov, S Vemparala, V Pophristic, K Kuroda, WF DeGrado, ...
Journal of the American Chemical Society 128 (6), 1778-1779, 2006
1032006
Conserved structural chemistry for incision activity in structurally non-homologous apurinic/apyrimidinic endonuclease APE1 and endonuclease IV DNA repair enzymes
SE Tsutakawa, DS Shin, CD Mol, T Izumi, AS Arvai, AK Mantha, ...
Journal of Biological Chemistry 288 (12), 8445-8455, 2013
1002013
First-principles study of aqueous hydroxide solutions
B Chen, JM Park, I Ivanov, G Tabacchi, ML Klein, M Parrinello
Journal of the American Chemical Society 124 (29), 8534-8535, 2002
992002
Histone H4 acetylation differentially modulates arginine methylation by an in Cis mechanism
Y Feng, J Wang, S Asher, L Hoang, C Guardiani, I Ivanov, YG Zheng
Journal of Biological Chemistry 286 (23), 20323-20334, 2011
952011
The design and evaluation of heparin-binding foldamers
S Choi, DJ Clements, V Pophristic, I Ivanov, S Vemparala, JS Bennett, ...
Angewandte Chemie-International Edition 44 (41), 6685-6688, 2005
932005
Diamidine compounds for selective inhibition of protein arginine methyltransferase 1
L Yan, C Yan, K Qian, H Su, SA Kofsky-Wofford, WC Lee, X Zhao, MC Ho, ...
Journal of medicinal chemistry 57 (6), 2611-2622, 2014
892014
Proliferating cell nuclear antigen loaded onto double-stranded DNA: dynamics, minor groove interactions and functional implications
I Ivanov, BR Chapados, JA McCammon, JA Tainer
Nucleic acids research 34 (20), 6023-6033, 2006
892006
Nanosecond-timescale conformational dynamics of the human α7 nicotinic acetylcholine receptor
X Cheng, I Ivanov, H Wang, SM Sine, JA McCammon
Biophysical journal 93 (8), 2622-2634, 2007
862007
Deprotonation of a histidine residue in aqueous solution using constrained ab initio molecular dynamics
I Ivanov, ML Klein
Journal of the American Chemical Society 124 (45), 13380-13381, 2002
822002
Barriers to ion translocation in cationic and anionic receptors from the Cys-loop family
I Ivanov, X Cheng, SM Sine, JA McCammon
Journal of the American Chemical Society 129 (26), 8217-8224, 2007
792007
Structural mechanism of ATP-independent transcription initiation by RNA polymerase I
Y Han, C Yan, T Nguyen, A Jackobel, I Ivanov, B Knutson, Y He
eLife 6, e27414, 2017
722017
Solution X-ray scattering combined with computational modeling reveals multiple conformations of covalently bound ubiquitin on PCNA
SE Tsutakawa, AW Van Wynsberghe, BD Freudenthal, CP Weinacht, ...
Proceedings of the National Academy of Sciences 108 (43), 17672-17677, 2011
722011
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