| An updated evolutionary classification of CRISPRCas systems KS Makarova, YI Wolf, OS Alkhnbashi, F Costa, SA Shah, SJ Saunders, ... Nature reviews microbiology 13 (11), 722-736, 2015 | 3032 | 2015 |
| Evolutionary classification of CRISPRCas systems: a burst of class 2 and derived variants KS Makarova, YI Wolf, J Iranzo, SA Shmakov, OS Alkhnbashi, SJJ Brouns, ... Nature Reviews Microbiology 18 (2), 67-83, 2020 | 2111 | 2020 |
| Large-scale association analyses identify host factors influencing human gut microbiome composition A Kurilshikov, C Medina-Gomez, R Bacigalupe, D Radjabzadeh, J Wang, ... Nature genetics 53 (2), 156-165, 2021 | 1215 | 2021 |
| Protospacer recognition motifs: mixed identities and functional diversity SA Shah, S Erdmann, FJM Mojica, RA Garrett RNA biology 10 (5), 891-899, 2013 | 504 | 2013 |
| A novel interference mechanism by a type IIIB CRISPR‐Cmr module in Sulfolobus L Deng, RA Garrett, SA Shah, X Peng, Q She Molecular microbiology 87 (5), 1088-1099, 2013 | 299 | 2013 |
| CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties RK Lillestøl, SA Shah, K Brügger, P Redder, H Phan, J Christiansen, ... Molecular microbiology 72 (1), 259-272, 2009 | 295 | 2009 |
| Type IV CRISPRCas systems are highly diverse and involved in competition between plasmids R Pinilla-Redondo, D Mayo-Muñoz, J Russel, RA Garrett, L Randau, ... Nucleic acids research 48 (4), 2000-2012, 2020 | 186 | 2020 |
| CRISPRCasTyper: automated identification, annotation, and classification of CRISPR-Cas loci J Russel, R Pinilla-Redondo, D Mayo-Muñoz, SA Shah, SJ Sørensen The CRISPR journal 3 (6), 462-469, 2020 | 184 | 2020 |
| CRISPR adaptive immune systems of Archaea G Vestergaard, RA Garrett, SA Shah RNA biology 11 (2), 156-167, 2014 | 166 | 2014 |
| Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies L Guo, K Brügger, C Liu, SA Shah, H Zheng, Y Zhu, S Wang, RK Lillestøl, ... Journal of bacteriology 193 (7), 1672-1680, 2011 | 162 | 2011 |
| Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma J Stokholm, J Thorsen, MJ Blaser, MA Rasmussen, M Hjelmsø, S Shah, ... Science translational medicine 12 (569), eaax9929, 2020 | 137 | 2020 |
| Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism SA Shah, NR Hansen, RA Garrett Biochemical Society Transactions 37 (1), 23-28, 2009 | 120 | 2009 |
| Archaeal CRISPR-based immune systems: exchangeable functional modules RA Garrett, G Vestergaard, SA Shah Trends in microbiology 19 (11), 549-556, 2011 | 119 | 2011 |
| CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems SA Shah, RA Garrett Research in Microbiology 162 (1), 27-38, 2011 | 117 | 2011 |
| Characterizing leader sequences of CRISPR loci OS Alkhnbashi, SA Shah, RA Garrett, SJ Saunders, F Costa, R Backofen Bioinformatics 32 (17), i576-i585, 2016 | 110 | 2016 |
| Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism P Redder, X Peng, K Brügger, SA Shah, F Roesch, B Greve, Q She, ... Environmental microbiology 11 (11), 2849-2862, 2009 | 106 | 2009 |
| Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families SA Shah, OS Alkhnbashi, J Behler, W Han, Q She, WR Hess, RA Garrett, ... RNA biology 16 (4), 530-542, 2019 | 101 | 2019 |
| Streamlining CRISPR spacer-based bacterial host predictions to decipher the viral dark matter MB Dion, PL Plante, E Zufferey, SA Shah, J Corbeil, S Moineau Nucleic acids research 49 (6), 3127-3138, 2021 | 97 | 2021 |
| The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition X Li, J Stokholm, A Brejnrod, GA Vestergaard, J Russel, U Trivedi, ... Cell host & microbe 29 (6), 975-987. e4, 2021 | 95 | 2021 |
| Urbanized microbiota in infants, immune constitution, and later risk of atopic diseases J Lehtimäki, J Thorsen, MA Rasmussen, M Hjelmsø, S Shah, ... Journal of Allergy and Clinical Immunology 148 (1), 234-243, 2021 | 83 | 2021 |
