Bart M. H. Bruininks
Bart M. H. Bruininks
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Martini 3: a general purpose force field for coarse-grained molecular dynamics
PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ...
Nature methods 18 (4), 382-388, 2021
CHARMM‐GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides
PC Hsu, BMH Bruininks, D Jefferies, P Cesar Telles de Souza, J Lee, ...
Journal of computational chemistry 38 (27), 2354-2363, 2017
Bottom-up fabrication of a proteasome–nanopore that unravels and processes single proteins
S Zhang, G Huang, RCA Versloot, BMH Bruininks, PCT de Souza, ...
Nature chemistry 13 (12), 1192-1199, 2021
A molecular view on the escape of lipoplexed DNA from the endosome
BMH Bruininks, PCT Souza, H Ingolfsson, SJ Marrink
Elife 9, e52012, 2020
A practical view of the martini force field
BMH Bruininks, PCT Souza, SJ Marrink
Biomolecular Simulations: Methods and Protocols, 105-127, 2019
Synthetic membrane shaper for controlled liposome deformation
N De Franceschi, W Pezeshkian, A Fragasso, BMH Bruininks, S Tsai, ...
ACS nano 17 (2), 966-978, 2022
Complex nanoemulsion for vitamin delivery: droplet organization and interaction with skin membranes
N Machado, BMH Bruininks, P Singh, L Dos Santos, C Dal Pizzol, ...
Nanoscale 14 (2), 506-514, 2022
Sequential voxel-based leaflet segmentation of complex lipid morphologies
BMH Bruininks, AS Thie, PCT Souza, TA Wassenaar, S Faraji, SJ Marrink
Journal of Chemical Theory and Computation 17 (12), 7873-7885, 2021
Biomolecular Simulations
BM Bruininks, PC Souza, SJ Marrink
Springer, 2019
Unbreaking Assemblies in Molecular Simulations with Periodic Boundaries
BMH Bruininks, TA Wassenaar, I Vattulainen
Journal of chemical information and modeling 63 (11), 3448-3452, 2023
Regulation of cell dynamics by rapid transport of integrins through the biosynthetic pathway
M Lerche, M Mathieu, L Maler°d, NM Pedersen, H Hamidi, M Chastney, ...
bioRxiv, 2022.07. 12.498931, 2022
On the road to simulating life with molecular detail
B Bruininks
Towards Molecular Simulations of Juxtaposed Biomembranes
EE Jefferys, B Bruininks, PCT Souza, SJ Marrink, MS Sansom
Biophysical Journal 116 (3), 176a, 2019
Microscopic View on Non-viral Mediated Transfection
BM Bruininks, PCT De Souza, SJ Marrink
Biophysical Journal 114 (3), 602a, 2018
Conversion of the HK97 gp6 ring-forming aquatic protein into a pore-forming protein
BMH Bruininks, SJ Marrink, G Maglia
Faculty of Science and Engineering, 2016
Computational microscopy of the Gram-negative cell envelope
BMH Bruininks, PCT Sauza, AH de Vries, SJ Marrink
Faculty of Science and Engineering, 2016
Practical applications for Martini coarse-grained DNA
BMH Bruininks
Faculty of Science and Engineering, 2015
REVIEW Multiple forms of cytokinesis in D discoideum
BMH Bruininks
Faculty of Science and Engineering, 2013
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