| RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research 47 (D1), D221-D229, 2019 | 239 | 2019 |
| SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization ND Damas, M Marcatti, C Côme, LL Christensen, MM Nielsen, ... Nature communications 7 (1), 13875, 2016 | 202 | 2016 |
| RNAcentral 2021: secondary structure integration, improved sequence search and new member databases Nucleic acids research 49 (D1), D212-D220, 2021 | 197 | 2021 |
| Transcriptomic landscape of lncRNAs in inflammatory bowel disease AH Mirza, CHB Berthelsen, SE Seemann, X Pan, KS Frederiksen, ... Genome medicine 7, 1-22, 2015 | 181 | 2015 |
| RNA snp: efficient detection of local RNA secondary structure changes induced by SNP s R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ... Human mutation 34 (4), 546-556, 2013 | 172 | 2013 |
| The RNAsnp web server: predicting SNP effects on local RNA secondary structure R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ... Nucleic acids research 41 (W1), W475-W479, 2013 | 143 | 2013 |
| Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments SE Seemann, J Gorodkin, R Backofen Nucleic Acids Research 36 (20), 6355-6362, 2008 | 116 | 2008 |
| The identification and functional annotation of RNA structures conserved in vertebrates SE Seemann, AH Mirza, C Hansen, CH Bang-Berthelsen, C Garde, ... Genome research 27 (8), 1371-1383, 2017 | 85 | 2017 |
| Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 6 (1), 34589, 2016 | 68 | 2016 |
| PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences SE Seemann, AS Richter, T Gesell, R Backofen, J Gorodkin Bioinformatics 27 (2), 211-219, 2011 | 62 | 2011 |
| Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain Z Sükösd, ES Andersen, SE Seemann, MK Jensen, M Hansen, ... Nucleic acids research 43 (21), 10168-10179, 2015 | 41 | 2015 |
| The PETfold and PETcofold web servers for intra-and intermolecular structures of multiple RNA sequences SE Seemann, P Menzel, R Backofen, J Gorodkin Nucleic acids research 39 (suppl_2), W107-W111, 2011 | 39 | 2011 |
| RNAscClust: clustering RNA sequences using structure conservation and graph based motifs M Miladi, A Junge, F Costa, SE Seemann, JH Havgaard, J Gorodkin, ... Bioinformatics 33 (14), 2089-2096, 2017 | 33 | 2017 |
| Structured RNAs and synteny regions in the pig genome C Anthon, H Tafer, JH Havgaard, B Thomsen, J Hedegaard, SE Seemann, ... BMC genomics 15, 1-27, 2014 | 26 | 2014 |
| Detection of RNA structures in porcine EST data and related mammals SE Seemann, MJ Gilchrist, IL Hofacker, PF Stadler, J Gorodkin BMC genomics 8, 1-17, 2007 | 23 | 2007 |
| Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions SE Seemann, AS Richter, J Gorodkin, R Backofen Algorithms for Molecular Biology 5, 1-13, 2010 | 20 | 2010 |
| RILogo: visualizing RNA–RNA interactions P Menzel, SE Seemann, J Gorodkin Bioinformatics 28 (19), 2523-2526, 2012 | 19 | 2012 |
| CRISPRroots: on- and off-target assessment of RNA-seq data in CRISPR–Cas9 edited cells GI Corsi, VP Gadekar, J Gorodkin, SE Seemann Nucleic Acids Research 50 (4), e20-e20, 2022 | 18 | 2022 |
| BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information access AS Geissler, C Anthon, F Alkan, E González-Tortuero, LD Poulsen, ... Microbial Genomics 7 (2), 000524, 2021 | 18 | 2021 |
| DotAligner: identification and clustering of RNA structure motifs MA Smith, SE Seemann, XC Quek, JS Mattick Genome biology 18, 1-12, 2017 | 18 | 2017 |
