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Stephen Woloszynek
Stephen Woloszynek
Beth Israel Deaconess Medical Center, Harvard University
Verified email at bidmc.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of The Royal Society Interface 15 (141), 20170387, 2018
14692018
Emerging priorities for microbiome research
CM Cullen, KK Aneja, S Beyhan, CE Cho, S Woloszynek, M Convertino, ...
Frontiers in microbiology 11, 136, 2020
1042020
Long-term urban market dynamics reveal increased bushmeat carcass volume despite economic growth and proactive environmental legislation on Bioko Island, Equatorial Guinea
DT Cronin, S Woloszynek, WA Morra, S Honarvar, JM Linder, MK Gonder, ...
PloS one 10 (7), e0134464, 2015
432015
Metagenomic characterization of ambulances across the USA
NB O’Hara, HJ Reed, E Afshinnekoo, D Harvin, N Caplan, G Rosen, ...
Microbiome 5 (1), 1-20, 2017
312017
16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses
S Woloszynek, Z Zhao, J Chen, GL Rosen
PLoS computational biology 15 (2), e1006721, 2019
272019
Opportunities and obstacles for deep learning in biology and medicine. JR Soc. Interface 15
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
162017
Exploring thematic structure and predicted functionality of 16S rRNA amplicon data
S Woloszynek, JC Mell, Z Zhao, G Simpson, MP O’Connor, GL Rosen
PLoS One 14 (12), e0219235, 2019
152019
Engineering human microbiota: influencing cellular and community dynamics for therapeutic applications
S Woloszynek, S Pastor, JC Mell, N Nandi, B Sokhansanj, GL Rosen
International review of cell and molecular biology 324, 67-124, 2016
152016
Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network
Z Zhao, S Woloszynek, F Agbavor, JC Mell, BA Sokhansanj, GL Rosen
PLoS computational biology 17 (9), e1009345, 2021
142021
Opportunities and obstacles for deep learning in biology and medicine. JR Soc Interface. 2018; 15 (141)
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Epub 2018/04/06. https://doi. org/10.1098/rsif. 2017.0387 PMID: 29618526, 2017
142017
Renin–angiotensin–aldosterone system inhibitors in pediatric focal segmental glomerulosclerosis
S Kangovi, M Edwards, S Woloszynek, N Mitra, H Feldman, BS Kaplan, ...
Pediatric Nephrology 27, 813-819, 2012
142012
Exploring thematic structure in 16S rRNA marker gene surveys
S Woloszynek, JC Mell, G Simpson, GL Rosen
BioRxiv, 146126, 2017
132017
Does getting defensive get you anywhere?—Seasonal balancing selection, temperature, and parasitoids shape real‐world, protective endosymbiont dynamics in the pea aphid
AH Smith, MP O’Connor, B Deal, C Kotzer, A Lee, B Wagner, J Joffe, ...
Molecular ecology 30 (10), 2449-2472, 2021
122021
Artificial intelligence based on machine learning in pharmacovigilance: a scoping review
B Kompa, JB Hakim, A Palepu, KG Kompa, M Smith, PA Bain, ...
Drug Safety 45 (5), 477-491, 2022
62022
Analysis methods for shotgun metagenomics
S Woloszynek, Z Zhao, G Ditzler, JR Price, ER Reichenberger, Y Lan, ...
Theoretical and Applied Aspects of Systems Biology, 71-112, 2018
52018
Themetagenomics: exploring thematic structure and predicted functionality of 16s rRNA amplicon data
S Woloszynek, JC Mell, Z Zhao, G Simpson, MP O’Connor, GL Rosen
bioRxiv, 678110, 2019
22019
Evaluating a topic model approach for parsing microbiome data structure
S Woloszynek, Z Zhao, G Simpson, MP O’Connor, JC Mell, GL Rosen
bioRxiv, 176412, 2017
22017
Does getting defensive get you anywhere?---Seasonally varying selection in pea aphids shapes a dynamic infection polymorphism with a protective bacterial endosymbiont
D Smith, M O'Connor, B Deal, C Kotzer, A Lee, B Wagner, J Joffe, ...
Authorea Preprints, 2020
12020
theseus-An R package for the analysis and visualization of microbial community data
JR Price, S Woloszynek, G Rosen, CM Sales
bioRxiv, 295675, 2018
12018
Predation and parasitism induces community stability and performance within EBPR reactors
J Price, Y Nan, Y Wang, M Cheng, S Keshani, S Woloszynek, G Rosen, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 257, 2019
2019
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